View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_576 (Length: 204)
Name: NF10855A_low_576
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_576 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 8e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 5831863 - 5832045
Alignment:
| Q |
1 |
gaactgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatattgc |
100 |
Q |
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| T |
5831863 |
gaactgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatattgc |
5831962 |
T |
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| Q |
101 |
ataatccattagttcctcaaacgtgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaactcttcctt |
183 |
Q |
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| T |
5831963 |
ataatccattagttcctcaaacgtgccatttttcaccacacgaatctctaatggcccaattgaattatcagcaactcttcctt |
5832045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 5824161 - 5823994
Alignment:
| Q |
16 |
tagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatattgcataatccattagttc |
115 |
Q |
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| T |
5824161 |
tagagtcaagaagttccactacaggtgtgagactcacgcacctaggaactttatattgattaatcgatgcaccacacgatatataataatccatcaaatc |
5824062 |
T |
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| Q |
116 |
ctcaaacgtgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaactcttcctt |
183 |
Q |
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| T |
5824061 |
ctcgaatgtgccatttttcaccacacgaatctctaatggcccaattgaattatcagcaactcttcctt |
5823994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 78929 - 78763
Alignment:
| Q |
9 |
accaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatattgcataatcca |
108 |
Q |
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| T |
78929 |
accaccctagagtccaaaagctccattataggagtaaaattaacacaccttggaactttatattgatttattgaagcacctcttgagattgcataatcca |
78830 |
T |
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| Q |
109 |
ttagttcctcaaacgtgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaac |
175 |
Q |
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| T |
78829 |
taagctcctcaaaagttccactcttcacaacccttatctccaatggtccaattgaatgatcagcaac |
78763 |
T |
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