View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_578 (Length: 204)
Name: NF10855A_low_578
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_578 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 8446389 - 8446239
Alignment:
| Q |
20 |
tctatagctaaaatgagtgcatatagcagtaaatgtagtagtatctgatgtattgtagtggtatattttttctcatcaccaattttctcatgatggattt |
119 |
Q |
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| T |
8446389 |
tctatagctaaaatgagtgcatatagcagtaaatgtagtagtatctgatgtattgtagtggtatattttttctcatctccaattttctcatgatggattt |
8446290 |
T |
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| Q |
120 |
cagatttgattgtgattagaagaagattgaagcatttgttgaagcatttag |
170 |
Q |
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| T |
8446289 |
cagatttgattgtgattagaagaagattgaagcatttgttgaaacatttag |
8446239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 8365140 - 8365083
Alignment:
| Q |
103 |
tttctcatgatggatttcagatttgattgtgattagaagaagattgaagcatttgttg |
160 |
Q |
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| T |
8365140 |
tttctcatgacggattttagattggatcatgattagaagaagattgaagcatttgttg |
8365083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 157
Target Start/End: Complemental strand, 8420395 - 8420296
Alignment:
| Q |
60 |
gtatctgatgtattgtagtggtatattttttctcatcac---caat-tttctcatgatggatttcagatttgattgtgattagaagaagattgaagcatt |
155 |
Q |
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| T |
8420395 |
gtatctgatgtattacagtggtatattttttctcatctccttcaataattttcatgatggattttagattgga--gtgattagaagaagatcgacgcatt |
8420298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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