View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_579 (Length: 204)

Name: NF10855A_low_579
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_579
NF10855A_low_579
[»] chr5 (10 HSPs)
chr5 (15-190)||(30058251-30058426)
chr5 (15-190)||(30714935-30715117)
chr5 (15-74)||(30398475-30398534)
chr5 (15-180)||(29870285-29870461)
chr5 (15-74)||(30679221-30679280)
chr5 (15-73)||(30433907-30433964)
chr5 (15-74)||(29851383-29851443)
chr5 (19-74)||(30481429-30481484)
chr5 (70-115)||(30679157-30679202)
chr5 (71-122)||(30398554-30398605)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 30058251 - 30058426
Alignment:
Q  15 aacaatatatcattcaaataaacaatctaaagcaaataaatacaaaagaccaataaaaaccttgatgatcagactttctattgtgtacagagctccgacc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30058251 aacaatatatcattcaaataaacaatctaaagcaaataaatacaaaagaccaataaaaaccttgatgatcagactttctattgtgtacagagctccgacc 30058350  T
Q  115 cacgccccaatgatcaaaagcgaaaacctctaccaccaccggactcattgtcacatcctccactccgaatgatgtc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30058351 cacgccccaatgatcaaaagcgaaaacctctaccaccaccggactcattgtcacatcctccactccgaacgatgtc 30058426  T

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Target: chr5; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 30715117 - 30714935
Alignment:
Q  15 aacaatatatcattcaaataaacaatctaaagcaaataaatacaaaaga-------ccaataaaaaccttgatgatcagactttctattgtgtacagagc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||||||    
T  30715117 aacaatatatcattcaaataaacaatctaaagcaaataaatacaaaagagtaaagaccaataaaaaccttgatgatcagactttctattgtgcacagagc 30715018  T
Q  108 tccgacccacgccccaatgatcaaaagcgaaaacctctaccaccaccggactcattgtcacatcctccactccgaatgatgtc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30715017 tccgacccacgccccaatgatcaaaagcgaaaacctctaccaccaccggactcattgtcacatcctccactccgaacgatgtc 30714935  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 30398475 - 30398534
Alignment:
Q  15 aacaatatatcattcaaataaacaatctaaagcaaataaatacaaaagaccaataaaaac 74  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||    
T  30398475 aacaatatatcattcaaataaacaatctaaaacaaataaataaaaaagaccaacaaaaac 30398534  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 29870285 - 29870461
Alignment:
Q  15 aacaatatatcattcaaataaacaatctaaagcaaataaatacaaaagaccaata---------aaaaccttgatgatcagactttctattgtgtacaga 105  Q
    ||||||||| |||||||| ||| |||||||| |||||||||| ||||||||||||         |||||||||||||||||| || ||| || | ||  |    
T  29870285 aacaatataccattcaaagaaagaatctaaaacaaataaataaaaaagaccaataaaaatggagaaaaccttgatgatcagagttgctaatgggcacgca 29870384  T
Q  106 gctccgacccacgccccaatgatcaaaagcgaaaacctc--taccaccaccggactcattgtcacatcctccactcc 180  Q
    |||| |||||||||||  |  ||||||| || || ||||  |||||||||||||||| ||||||| |||||||||||    
T  29870385 gctctgacccacgccctcactatcaaaatcgcaatcctcgataccaccaccggactcgttgtcacctcctccactcc 29870461  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 30679280 - 30679221
Alignment:
Q  15 aacaatatatcattcaaataaacaatctaaagcaaataaatacaaaagaccaataaaaac 74  Q
    |||||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||||    
T  30679280 aacaatatatcattcaaataaacagtctaaaacaaataaataaaaaagaccaacaaaaac 30679221  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 30433907 - 30433964
Alignment:
Q  15 aacaatatatcattcaaataaacaatctaaagcaaataaatacaaaagaccaataaaaa 73  Q
    |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  30433907 aacaatatatcattcaaacaaacaatataaagcaaataaata-aaaagaccaataaaaa 30433964  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 29851383 - 29851443
Alignment:
Q  15 aacaatatatcattcaaataaacaatctaaagcaaataaat-acaaaagaccaataaaaac 74  Q
    ||||||||||||||||||||||||||| ||| |||| |||| | |||||||||||||||||    
T  29851383 aacaatatatcattcaaataaacaatccaaaacaaacaaataaaaaaagaccaataaaaac 29851443  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 30481429 - 30481484
Alignment:
Q  19 atatatcattcaaataaacaatctaaagcaaataaatacaaaagaccaataaaaac 74  Q
    |||||| |||||||||||||||||||| ||||||||||  || |||||||||||||    
T  30481429 atatattattcaaataaacaatctaaaacaaataaataagaatgaccaataaaaac 30481484  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 30679202 - 30679157
Alignment:
Q  70 aaaaccttgatgatcagactttctattgtgtacagagctccgaccc 115  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||    
T  30679202 aaaaccttgatgatcagactttctactgtgcactgagctccgaccc 30679157  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 30398554 - 30398605
Alignment:
Q  71 aaaccttgatgatcagactttctattgtgtacagagctccgacccacgcccc 122  Q
    |||||||||||||||||||| ||| || | |||||||||||||||| |||||    
T  30398554 aaaccttgatgatcagacttgctaatgggcacagagctccgacccatgcccc 30398605  T

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