View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_58 (Length: 405)
Name: NF10855A_low_58
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 36603599 - 36603201
Alignment:
| Q |
1 |
attctacgatgcatcagttatttggggcttaattggtccaagaagaatcttcggaaacttaggaacctacgagaatatcaattggttcttcctaggtgga |
100 |
Q |
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| T |
36603599 |
attctacgatgcatcagttatttggggcttaattggtccaagaagaatcttcggaaacttaggaacctacgagaatatcaattggttcttcctaggtgga |
36603500 |
T |
|
| Q |
101 |
gccattgctcctttgttagtttggttagctacaagagcctttccacaacaagaatggattaaactcatcaacatgcctgtgttgataggtgctactggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603499 |
gccattgctcctttgttagtttggttagctacaagagcctttccacaacaagaatggattaaactcatcaacatgcctgtgttgataggtgctactggaa |
36603400 |
T |
|
| Q |
201 |
tgatgccaccagctacagcagtgaattacactagctggatcattgttggttttttgtctgggtttgttgtgtataggtataaaccagattggtggcagcg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
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| T |
36603399 |
tgatgccaccagctacagcagtgaattacactagctggatcattgttggttttttgtctggttttgttgtgtataggtataagccagaatggtggcagcg |
36603300 |
T |
|
| Q |
301 |
tcataattatgtgttgtctggtgcattggatgctggtcttgctttcatgggtgtggttttgtacctttgtttaggattagaggaaataagtattgattg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603299 |
tcataattatgtgttgtctggtgcattggatgctggtcttgctttcatgggtgtggttttgtacctttgtttaggattagaggaaataagtattgattg |
36603201 |
T |
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