View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_585 (Length: 201)
Name: NF10855A_low_585
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_585 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 10368546 - 10368475
Alignment:
| Q |
130 |
cacaagtttggtgacatttatataggctctttgtagatgacatattaaatcaatcaatccgttgaattgaaa |
201 |
Q |
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| T |
10368546 |
cacaagtttggtgacatttatataggctctttgtagatgacatattaaatcaatcaatccgttgaattgaaa |
10368475 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 10368662 - 10368608
Alignment:
| Q |
14 |
actgagatgaaggagaagaagaagaatggagttcaaagattcagatttgttttct |
68 |
Q |
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| T |
10368662 |
actgagatgaaggagaagaagaagaatggagttcaaagattcagatttgttttct |
10368608 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 36116774 - 36116814
Alignment:
| Q |
19 |
gatgaaggagaagaagaagaatggagttcaaagattcagat |
59 |
Q |
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| T |
36116774 |
gatgaaggagaagaagaataatggagttcaaagattcagat |
36116814 |
T |
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