View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_6 (Length: 560)
Name: NF10855A_low_6
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 7 - 501
Target Start/End: Original strand, 11059571 - 11060066
Alignment:
| Q |
7 |
tcaaggatgccagcaagcgatggatgaagctgagaaggattacaagaagttgtctgagcggattactgaaagtcgagaggcgatgaaggttattaatcct |
106 |
Q |
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| T |
11059571 |
tcaaggatgccagcaagcgatggatgaagctgagaaggattacaagaagttgtctgagcggattactgaaagtcgagaggcgatgaaggttattaatcct |
11059670 |
T |
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| Q |
107 |
tcattatcattcaaaaaacttgattaagatttaagagactaatatatatggttgttttttcaggcttcttatgaagagtttatggctgaggcacaggcta |
206 |
Q |
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| T |
11059671 |
tcattatcattcaaaaaacttgattaagatttaagagactaatatatatggttgttttttcaggcttcttatgaagagtttatggctgaggcacaggcta |
11059770 |
T |
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| Q |
207 |
ctgcaaatcgtggtatgcatagtagaatcagtttcaaaataacatagtgcttatgatccaatttatggttgttattttatactgcctagtgcctatagta |
306 |
Q |
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| T |
11059771 |
ctgcaaatcgtggtatgcatagtagaatcaatttcaaaataacatagtgcttatgatccaatttatggttgttattttatactgcctagtgcctatagta |
11059870 |
T |
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| Q |
307 |
ttttgttatatagcatgaatagagtgatggatgtttttgtagaaattaccatttgcatgctatttgtatgtttttgtggatgttaatacatgagaagaat |
406 |
Q |
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| T |
11059871 |
ttatgttatatagcatgaatagagtgatggatgtttttgtagaaattaccatttgcatgctatttgtatgtttttgtggatgttgatacatgagaagaat |
11059970 |
T |
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| Q |
407 |
atccctaat-nnnnnnnntacatgagaagaataaaacatacatgaaataaaaggagtgacttaaaagctataaaacactgacttggacacgataat |
501 |
Q |
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| T |
11059971 |
atccctaataaaaaaaaatacatgagaagaataaaacatacatgaaataaaaggagtgacttaaaagctataaaacactgactcggacacgataat |
11060066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 499 - 548
Target Start/End: Original strand, 11060102 - 11060151
Alignment:
| Q |
499 |
aattgaagtaatcaaatacaatcacaagtaccacaccgtcaatctatatt |
548 |
Q |
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| T |
11060102 |
aattgaagtaatcaaatacaatcacaagtaccacaccgtcaatctatatt |
11060151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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