View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_61 (Length: 401)

Name: NF10855A_low_61
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_61
NF10855A_low_61
[»] chr1 (1 HSPs)
chr1 (3-396)||(45099062-45099455)
[»] chr6 (2 HSPs)
chr6 (100-320)||(17348638-17348858)
chr6 (261-321)||(17363885-17363945)


Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 3 - 396
Target Start/End: Original strand, 45099062 - 45099455
Alignment:
Q  3 aatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatgttatattaaaccttgaagctaaacttgagttttcc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45099062 aatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatgttatattaaaccttgaagctaaacttgagttttcc 45099161  T
Q  103 ctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcatgtt 202  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45099162 ctattcatctgttgagcagtcatgtaaacattttcaggcgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcatgtt 45099261  T
Q  203 tagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtatcattaaaaggagttattttcatacctcctacattaatcct 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45099262 tagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtgtcattaaaaggagttattttcatacctcctacattaatcct 45099361  T
Q  303 atgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaaccaaccttgttccataatctataacaaaatct 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45099362 atgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaaccaaccttgttccataatctataacaaaatct 45099455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 320
Target Start/End: Complemental strand, 17348858 - 17348638
Alignment:
Q  100 tccctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcat 199  Q
    |||||||||||||  ||||||||||| |||||| | || || |||||||||  ||  || || || ||||| ||||| ||||| |||||||| ||| ||     
T  17348858 tccctattcatctcctgagcagtcatataaacactatccggcgcgatctctctagccgcgccccctttctgataatctggtgtgtgagtgctcactacag 17348759  T
Q  200 gtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtatcattaaaaggagttattttcatacctcctacattaat 299  Q
      |||||||| ||||||||||||| | |||||| |||||||||||| ||||||||||||||||||||||||||||||| |||   |||||| ||||||||    
T  17348758 ccttagctgcatccttaaaaaccagaaaatccttatcaggaatccatgttctccaaagggtatcattaaaaggagttaatttttcacctccaacattaat 17348659  T
Q  300 cctatgaacagtttccaaaac 320  Q
    |||||||| |||||| |||||    
T  17348658 cctatgaatagtttctaaaac 17348638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 17363945 - 17363885
Alignment:
Q  261 atcattaaaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacc 321  Q
    ||||||||| ||||||||||||| |||  | || ||||||||||||| |||||| ||||||    
T  17363945 atcattaaagggagttattttcaaaccatcaacgttaatcctatgaatagtttctaaaacc 17363885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University