View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_64 (Length: 400)
Name: NF10855A_low_64
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 2 - 385
Target Start/End: Original strand, 957120 - 957503
Alignment:
| Q |
2 |
cactggttgaaggatgtttatcccaaaaacgaaaacagatgaagaaagggtttgtttcaacttacagcttcaagcactttgatttcttgcaattacaacg |
101 |
Q |
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| T |
957120 |
cactggttgaaggatgtttatcccaaaaacaaaaacagatgaagaaagggtttgtttcaacttacagcttcaagcactttgatttcttgcaattacaacg |
957219 |
T |
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| Q |
102 |
tttgcagccctcaatttctccgactggctctgacttacgcctgcatatccaagcttagtataagtataatgaaaagaaatcaatgagatggaattttcaa |
201 |
Q |
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| T |
957220 |
tttgcagccctcaatttctccgactggctctgacttacgcctgcatatccaagtttagtataagtataatgaaaagaaatcaatgagatggaattttcaa |
957319 |
T |
|
| Q |
202 |
gcataaagcaggataatcgacaacttcgcttaccttttctttttggggctattctgattgaaatcttcagtagccatgtaagctattggctggggacaat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
957320 |
gcataaagcaggataatcgacaacttcgcttaccttttctttttggggctattctgattgaaatcttcagtagccatgtaagctattggctggggacaat |
957419 |
T |
|
| Q |
302 |
cttcggtaggctgaaccccgttgtcagatgggaccaattctctttcagatgatattgatacagatacgaccgatagatgctgat |
385 |
Q |
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| T |
957420 |
cttcggtaggctgaaccccgttgtcagatgggaccaattctctttcagatgatattgatacagatacgaccgatagatgctgat |
957503 |
T |
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