View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_65 (Length: 398)
Name: NF10855A_low_65
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 375
Target Start/End: Complemental strand, 25048923 - 25048544
Alignment:
| Q |
13 |
atctcctcctcttataaattgaaacgatactaaccataatcactttactctcataatcacttttctgaataatcagaattatcaattcacaatgacagct |
112 |
Q |
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| T |
25048923 |
atctcctcctcttataaattgaaacgatactaaccataatcactttactctcataatcacttttctgaataatcagaattatcaattcacaatgacagct |
25048824 |
T |
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| Q |
113 |
tttgatttcaacgtgcttctgttactattcattttatccataactcgtatcaatgcagctgttaaacctttggctgttcacgatgttccttttctcaatc |
212 |
Q |
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| T |
25048823 |
tttgatttcaacgtgcttctgttactattcattttatccataactcgtatcaatgcagctgttaaacctttgcctgttcacgatgttccttttctcaatc |
25048724 |
T |
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| Q |
213 |
ggagtagtttcccgccagattttatttttggaactgcttcctctgcatttcaggtatgaactattgatttc---------------------aattagcg |
291 |
Q |
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| T |
25048723 |
ggagtagtttcccgccagattttatttttggaactgcttcctctgcatttcaggtatgaactattgatttcaattttattatcactgatttcaattagcg |
25048624 |
T |
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| Q |
292 |
tgattttatatatgtaataatatgcaatgtagaagcatagttataagatatttgaattttttatatatagtatgaaggtgcagc |
375 |
Q |
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| T |
25048623 |
tgattttatatatgtaataatatgcaatgttgaagcatagttataagatatttgaattttt----tatagtatgaaggtgcagc |
25048544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 24988102 - 24988041
Alignment:
| Q |
205 |
tctcaatcggagtagtttcccgccagattttatttttggaactgcttcctctgcatttcagg |
266 |
Q |
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|||||||||||| ||||||||||| | ||| |||| ||||| ||||| ||||||||||||| |
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| T |
24988102 |
tctcaatcggagctgtttcccgccaaactttgttttcggaacagcttcttctgcatttcagg |
24988041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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