View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_68 (Length: 395)
Name: NF10855A_low_68
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_68 |
 | |
|
| [»] scaffold0889 (1 HSPs) |
| | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
|
| [»] scaffold1029 (3 HSPs) |
| | |
|
| [»] scaffold1033 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0889 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 4262 - 4650
Alignment:
| Q |
1 |
ataaatagctccacatattattcccatttcttcaaaataatcatctaccttgagttatactgctatagcaaaccacttcacatcttaaaaatatcaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4262 |
ataaatagctccacatattattcccatttcttcaaaataatcatcttccttgagttatactgctatagcaaaccacttcacatcttaaaaatatcaagaa |
4361 |
T |
|
| Q |
101 |
tggtaagtattttaattgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcagtgttctaatcaatgcacttttaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
4362 |
tggtaagtattttaattgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcaatgttctgatcaatgcacttttaca |
4461 |
T |
|
| Q |
201 |
tttttaggatgttttatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttatttgatc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4462 |
tttttaggatgttttatatgtcaaacaagctttgatatttaagaaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttatttgatc |
4561 |
T |
|
| Q |
301 |
gatattatccaaaggtttggtattgaacactattttgctgaggaaataaaagtggctcttgaaaatctgcatttgatattgaacaccaa |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4562 |
gatattatccaaaggtttggtattgaacactattttgctgaggaaataaatgtggctcttgaaaatctgcatttgatattgaacaccaa |
4650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 4466 - 4854
Alignment:
| Q |
1 |
ataaatagctccacatattattcccatttcttcaaaataatcatctaccttgagttatactgctatagcaaaccacttcacatcttaaaaatatcaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4466 |
ataaatagctccacatattattcccatttcttcaaaataatcatcttccttgagttatactgctatagcaaaccacttcacatcttaaaaatatcaagaa |
4565 |
T |
|
| Q |
101 |
tggtaagtattttaattgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcagtgttctaatcaatgcacttttaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
4566 |
tggtaagtattttaattgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcaatgttctgatcaatgcacttttaca |
4665 |
T |
|
| Q |
201 |
tttttaggatgttttatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttatttgatc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4666 |
tttttaggatgttttatatgtcaaacaagctttgatatttaagaaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttatttgatc |
4765 |
T |
|
| Q |
301 |
gatattatccaaaggtttggtattgaacactattttgctgaggaaataaaagtggctcttgaaaatctgcatttgatattgaacaccaa |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4766 |
gatattatccaaaggtttggtattgaacactattttgctgaggaaataaatgtggctcttgaaaatctgcatttgatattgaacaccaa |
4854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 97 - 389
Target Start/End: Complemental strand, 28568530 - 28568235
Alignment:
| Q |
97 |
agaatggtaagtattttaattgaaataccaatatatacagttattctaaatttatttacaacatagtttta---taatttcagtgttctaatcaat--gc |
191 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||| | || | |||||| | |||| |||||| || |
|
|
| T |
28568530 |
agaatggtaagtattttaattgaagtacgaatatatacagctattctaaatttagttacaacata--tatagctttatttcaatattctgatcaatctgc |
28568433 |
T |
|
| Q |
192 |
acttttacatttttaggatgttttatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttt |
291 |
Q |
| |
|
||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28568432 |
actcttacaattttaggatgttgtatatgtcaaacaagctttaatatttaagcaagtttataagaaacttgttaaaatcgaagatccgatggagagtttt |
28568333 |
T |
|
| Q |
292 |
tatttgatcgatattatccaaaggtttggtattgaacactattttgctgaggaaataaaagtggctcttgaaaatctgcatttgatattgaacaccaa |
389 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28568332 |
tatttgatggatattatccaaaggtttggtattgagcactattttgctgaggaaataaaagtggctcttgaaaatctgcatttgatattgaacaccaa |
28568235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 97 - 389
Target Start/End: Complemental strand, 28575366 - 28575075
Alignment:
| Q |
97 |
agaatggtaagtattttaattgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcagtgttctaatcaat--gcact |
194 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||||||||||||||||||| ||| ||||||||||| ||||| |||| |||||| |||||| ||||| |
|
|
| T |
28575366 |
agaatggtaagtattttaactgaagtacaaatatatacagttattctaaacttagttacaacatagctttat---ttcaatgttctgatcaatctgcact |
28575270 |
T |
|
| Q |
195 |
tttacatttttaggatgttttatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttat |
294 |
Q |
| |
|
|| || |||| |||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
28575269 |
ttgactttttcaggatgttacatatgttaagcaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagattcgatggagagtttttat |
28575170 |
T |
|
| Q |
295 |
ttgatcgatattatccaaaggtttggtattgaacactattttgctgaggaaataaaagtggctcttgaaaatctgcatttgatattgaacaccaa |
389 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
28575169 |
ttgatcgatatcatccaaaggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaaagctacatttgatattgaacaccaa |
28575075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 189 - 389
Target Start/End: Complemental strand, 28586485 - 28586285
Alignment:
| Q |
189 |
tgcacttttacatttttaggatgttttatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagt |
288 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |
|
|
| T |
28586485 |
tgcacttttacattttcaggatgttacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaattgaagatccgatggaaagt |
28586386 |
T |
|
| Q |
289 |
ttttatttgatcgatattatccaaaggtttggtattgaacactattttgctgaggaaataaaagtggctcttgaaaatctgcatttgatattgaacacca |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
28586385 |
ttttatttgatcgatattatccaaaggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaaagctacatttgacattgaacacca |
28586286 |
T |
|
| Q |
389 |
a |
389 |
Q |
| |
|
| |
|
|
| T |
28586285 |
a |
28586285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 97 - 385
Target Start/End: Complemental strand, 28580415 - 28580132
Alignment:
| Q |
97 |
agaatggtaagtattttaattgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcagtgttctaatcaatg--cact |
194 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||| || ||||||||||| || || |||||| | || |||||| |||||| |||| |
|
|
| T |
28580415 |
agaatggtaagtattttaattgaagtacaaatatatacaattgttctaaatttag----aatatctttttat---tgcaatgttctgatcaatctacact |
28580323 |
T |
|
| Q |
195 |
tttacatttttaggatgttttatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttat |
294 |
Q |
| |
|
|||||||||| |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
28580322 |
tttacattttcaggacgttacatatgtcaaacaagctttgatattcaagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttat |
28580223 |
T |
|
| Q |
295 |
ttgatcgatattatccaaaggtttggtattgaacactattttgctgaggaaataaaagtggctcttgaaaatctgcatttgatattgaaca |
385 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||| | ||||| || ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
28580222 |
ttgattgatattatccaaaggtttggcattgaacactactttaccgaggagatcaaagtggctcttgaaaaactacatttgatattgaaca |
28580132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 97 - 389
Target Start/End: Complemental strand, 26316419 - 26316133
Alignment:
| Q |
97 |
agaatggtaagtattttaattgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcagtgttctaatcaat--gcact |
194 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| |||| ||||| ||||| ||| ||| ||| |||||| |||||| |||| | ||||| |
|
|
| T |
26316419 |
agaatggtaagtattttaattgaagtacaaatatataaagttgttctagattta----caatatatttt----atttcaatgttctcatcattctgcact |
26316328 |
T |
|
| Q |
195 |
tttacatttttaggatgttttatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttat |
294 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
26316327 |
tttacattttcaggatgttacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaatatccgatggagagtttttat |
26316228 |
T |
|
| Q |
295 |
ttgatcgatattatccaaaggtttggtattgaacactattttgctgaggaaataaaagtggctcttgaaaatctgcatttgatattgaacaccaa |
389 |
Q |
| |
|
||||||||||| ||||||||| || ||||||||||| |||| ||| || || |||||||||||||| || || ||| ||||||||||||||| |
|
|
| T |
26316227 |
ttgatcgatatcatccaaaggcttaacattgaacactactttgttgaagagatcaaagtggctcttgagaagctatattcgatattgaacaccaa |
26316133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 197 - 362
Target Start/End: Complemental strand, 20618671 - 20618506
Alignment:
| Q |
197 |
tacatttttaggatgttttatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttattt |
296 |
Q |
| |
|
|||||||| |||||| | | |||||||| ||||||||||| | |||||||||| | ||||||||||||| | |||||||| | |||| |||| |||| |
|
|
| T |
20618671 |
tacattttcaggatgctatttatgtcaagcaagctttgatgtgtaagcaagttcacaagaaacttgttactagtgaagatccaactgagaattttcattt |
20618572 |
T |
|
| Q |
297 |
gatcgatattatccaaaggtttggtattgaacactattttgctgaggaaataaaagtggctcttga |
362 |
Q |
| |
|
||| || || ||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |
|
|
| T |
20618571 |
gattgacatcatccaaaggcttggtattgaacactactttgttgaggaaatcaaagtggctcttga |
20618506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 26316578 - 26316473
Alignment:
| Q |
1 |
ataaatagctccacatattattcccatttcttcaaaataatcatctaccttgagt-----------tatactgctatagcaaaccacttcacatcttaaa |
89 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26316578 |
ataaatagctcaacatatcattcccatttctccaaaataatcatcttccttgagttattttctctgtatactgctatagcaaaccacttcacatcttaac |
26316479 |
T |
|
| Q |
90 |
aatatc |
95 |
Q |
| |
|
|||||| |
|
|
| T |
26316478 |
aatatc |
26316473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28575473 - 28575428
Alignment:
| Q |
1 |
ataaatagctccacatattattcccatttcttcaaaataatcatct |
46 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
28575473 |
ataaatagctcaacatatcattcccatttcttcaaaataatcatct |
28575428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28580562 - 28580504
Alignment:
| Q |
1 |
ataaatagctccacatattattcccatttcttcaaaataatcatctaccttgagttata |
59 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
28580562 |
ataaatagctctacatgtcattcccatttcttcaaaataaccatcttccttgagctata |
28580504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28586718 - 28586661
Alignment:
| Q |
1 |
ataaatagctccacatattattcccatttcttcaaaataatcatctaccttgagttat |
58 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
28586718 |
ataaatagctcagcatatcattcccatttcttcaaaacaatcatcttccttaagttat |
28586661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 188 - 389
Target Start/End: Complemental strand, 24071957 - 24071756
Alignment:
| Q |
188 |
atgcacttttacatttttaggatgttttatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagag |
287 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | |
|
|
| T |
24071957 |
atgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgagaaacttgttaaaatcgaagatccgatggagtg |
24071858 |
T |
|
| Q |
288 |
tttttatttgatcgatattatccaaaggtttggtattgaacactattttgctgaggaaataaaagtggctcttgaaaatctgcatttgatattgaacacc |
387 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| ||||||||||| |||| ||| || || |||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
24071857 |
tttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagcggctcttgaaaacttgcatttgatattgaacacc |
24071758 |
T |
|
| Q |
388 |
aa |
389 |
Q |
| |
|
|| |
|
|
| T |
24071757 |
aa |
24071756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 24072183 - 24072089
Alignment:
| Q |
1 |
ataaatagctccacatattatt-cccatttcttcaaaataatcatctaccttgagttatactgctatagcaaaccacttcacatcttaaaaatatc |
95 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||| || || |||||||| | ||||||||||||||||||||||||| |||||| |
|
|
| T |
24072183 |
ataaatagctccacatatcatttcccatttcttcaaaataatcaacttccaa-agttataccgttatagcaaaccacttcacatcttaacaatatc |
24072089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 189 - 332
Target Start/End: Original strand, 3181 - 3324
Alignment:
| Q |
189 |
tgcacttttacatttttaggatgttttatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagt |
288 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
3181 |
tgcacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagt |
3280 |
T |
|
| Q |
289 |
ttttatttgatcgatattatccaaaggtttggtattgaacacta |
332 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
3281 |
ttttatttgattgatattatccaaaggtttggcattgaacacta |
3324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2976 - 3021
Alignment:
| Q |
1 |
ataaatagctccacatattattcccatttcttcaaaataatcatct |
46 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2976 |
ataaatagctccacatatcattcccatttcttcaaaataatcatct |
3021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 3098 - 3137
Alignment:
| Q |
97 |
agaatggtaagtattttaattgaaataccaatatatacag |
136 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
3098 |
agaatggtaagtattttaattgaagtacaaatatatacag |
3137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 3181 - 3270
Alignment:
| Q |
189 |
tgcacttttacatttttaggatgttttatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcc |
278 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3181 |
tgcacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcc |
3270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2976 - 3021
Alignment:
| Q |
1 |
ataaatagctccacatattattcccatttcttcaaaataatcatct |
46 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2976 |
ataaatagctccacatatcattcccatttcttcaaaataatcatct |
3021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 3098 - 3137
Alignment:
| Q |
97 |
agaatggtaagtattttaattgaaataccaatatatacag |
136 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
3098 |
agaatggtaagtattttaattgaagtacaaatatatacag |
3137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5893041 - 5892984
Alignment:
| Q |
1 |
ataaatagctccacatattattcccatttcttcaaaataatcatctaccttgagttat |
58 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5893041 |
ataaatagctccacatatcattcccatttcttcaaaataatcatcttccttgagttat |
5892984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 5892970 - 5892934
Alignment:
| Q |
58 |
tactgctatagcaaaccacttcacatcttaaaaatat |
94 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5892970 |
tactgctatagcaaactacttcacatcttaaaaatat |
5892934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 34812835 - 34812931
Alignment:
| Q |
13 |
acatattattcccatttcttcaaaataatcatctaccttgagttat--------------actgctatagcaaaccacttcacatcttaaaaatatc |
95 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34812835 |
acatatcattcccatttcttcaaaataatcatcttccttgagttattgtctctgtatactactgctatagcaaactacttcacatcttaaaaatatc |
34812931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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