View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_7 (Length: 556)

Name: NF10855A_low_7
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_7
NF10855A_low_7
[»] chr8 (4 HSPs)
chr8 (17-420)||(8683394-8683791)
chr8 (118-170)||(29749287-29749339)
chr8 (110-158)||(14928164-14928212)
chr8 (109-141)||(18732950-18732982)
[»] chr1 (8 HSPs)
chr1 (110-189)||(24808396-24808475)
chr1 (115-158)||(4541105-4541148)
chr1 (108-158)||(15255151-15255201)
chr1 (110-139)||(33651754-33651783)
chr1 (118-150)||(8344566-8344598)
chr1 (118-158)||(15707576-15707616)
chr1 (100-188)||(43391459-43391547)
chr1 (126-158)||(49825928-49825960)
[»] chr5 (5 HSPs)
chr5 (100-187)||(40677892-40677979)
chr5 (115-158)||(40877066-40877109)
chr5 (108-186)||(42440145-42440223)
chr5 (99-145)||(2643961-2644007)
chr5 (100-168)||(34101507-34101575)
[»] chr7 (7 HSPs)
chr7 (109-155)||(24673358-24673404)
chr7 (117-158)||(34925273-34925314)
chr7 (115-157)||(6518102-6518144)
chr7 (118-152)||(8558804-8558838)
chr7 (100-158)||(19130149-19130207)
chr7 (109-145)||(3250026-3250062)
chr7 (116-156)||(34501942-34501982)
[»] chr3 (3 HSPs)
chr3 (100-170)||(23790355-23790425)
chr3 (124-158)||(24276634-24276668)
chr3 (118-158)||(44622480-44622520)
[»] chr2 (7 HSPs)
chr2 (100-158)||(38434187-38434245)
chr2 (129-189)||(45071579-45071639)
chr2 (118-189)||(27242720-27242791)
chr2 (115-150)||(41947073-41947108)
chr2 (118-159)||(27678734-27678775)
chr2 (102-163)||(37449454-37449515)
chr2 (103-155)||(11521801-11521853)
[»] chr4 (8 HSPs)
chr4 (98-142)||(16495123-16495167)
chr4 (100-163)||(38596787-38596850)
chr4 (117-158)||(32427058-32427099)
chr4 (111-156)||(47213474-47213519)
chr4 (126-166)||(12909574-12909614)
chr4 (101-145)||(19984279-19984323)
chr4 (117-157)||(45554117-45554157)
chr4 (99-155)||(45599615-45599671)
[»] scaffold0223 (1 HSPs)
scaffold0223 (101-154)||(10604-10657)
[»] chr6 (4 HSPs)
chr6 (117-158)||(507832-507873)
chr6 (117-157)||(3247406-3247446)
chr6 (100-156)||(20869909-20869965)
chr6 (118-162)||(23137478-23137522)
[»] scaffold0898 (1 HSPs)
scaffold0898 (100-152)||(617-669)
[»] scaffold0790 (1 HSPs)
scaffold0790 (100-144)||(651-695)


Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Complemental strand, 8683791 - 8683394
Alignment:
Q  17 acatcatgaattacaacatagagtgagtaacaactcgaaggacaaaagtaaaacagcgaatgatatagattgaactataacaagtcaatcgtggatcaca 116  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8683791 acatcatgaatgacaacatagagtgagtaacaactccaaggacaaaagtaaaacagcgaatgatatagattgaactataacaagtcaatcgtggatcaca 8683692  T
Q  117 gaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaacacacagaacaatagcagttttctaaaata 216  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8683691 gaaaattgtagtttgttcaaattctgctatgctaaagtgctagagcgttgctatggccgttatttgacaacacacagaacaatagcagttttctaaaata 8683592  T
Q  217 gcgcctggcgccactatatccgctatttcacaacctacaagagacactgcccaaatttctgaaagcaatgagtcaagaaaggacaaaatttgctacctgt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||    
T  8683591 gcgcctggcgccactatatccgctatttcacaacctacaagagacactgcccaaatttctgaaagcaatga------aaaggacaaaatttgctacctgt 8683498  T
Q  317 aagcacataatggaagacgattcagaaagcaatgaatcaagaatcctttgattcctagctaaccaacgtgatctgaagtcactttctctgagtccttgat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8683497 aagcacataatggaagacgattcagaaagcaatgaatcaagaatcctttgattcctagctaaccaacgtgatctgaagtcactttctctgagtccttgat 8683398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 29749339 - 29749287
Alignment:
Q  118 aaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctat 170  Q
    |||||| || |||||||||||| |||||||||||||||||| |||| ||||||    
T  29749339 aaaataatattttgttcaaattttgctatgctacagtgctatagcgctgctat 29749287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 14928164 - 14928212
Alignment:
Q  110 gatcacagaaaatagtagtttgttcaaattctgctatgctacagtgcta 158  Q
    |||| ||||||||||| | ||||||||||| |||||||| |||||||||    
T  14928164 gatcgcagaaaatagtgggttgttcaaattttgctatgcaacagtgcta 14928212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 18732982 - 18732950
Alignment:
Q  109 ggatcacagaaaatagtagtttgttcaaattct 141  Q
    |||||||||||||| ||||||||||||||||||    
T  18732982 ggatcacagaaaattgtagtttgttcaaattct 18732950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 24808475 - 24808396
Alignment:
Q  110 gatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaacac 189  Q
    |||||| ||||| ||| |||||||||||||||||||||||||||||||  |||  ||||||| || ||||||||||||||    
T  24808475 gatcacggaaaacagtggtttgttcaaattctgctatgctacagtgctttagcactgctatgaccattatttgacaacac 24808396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 4541105 - 4541148
Alignment:
Q  115 cagaaaatagtagtttgttcaaattctgctatgctacagtgcta 158  Q
    ||||||||||| |||||||||||||| |||||||||||| ||||    
T  4541105 cagaaaatagttgtttgttcaaattccgctatgctacagcgcta 4541148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 15255151 - 15255201
Alignment:
Q  108 tggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgcta 158  Q
    |||||| ||||||||||| ||||||| |||||||||||||| ||| |||||    
T  15255151 tggatcgcagaaaatagtggtttgtttaaattctgctatgcaacattgcta 15255201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 33651783 - 33651754
Alignment:
Q  110 gatcacagaaaatagtagtttgttcaaatt 139  Q
    ||||||||||||||||||||||||||||||    
T  33651783 gatcacagaaaatagtagtttgttcaaatt 33651754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 8344598 - 8344566
Alignment:
Q  118 aaaatagtagtttgttcaaattctgctatgcta 150  Q
    |||||||| ||||||||||||||||||||||||    
T  8344598 aaaatagtggtttgttcaaattctgctatgcta 8344566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 15707576 - 15707616
Alignment:
Q  118 aaaatagtagtttgttcaaattctgctatgctacagtgcta 158  Q
    ||||||| ||||||||||||||| ||||||||| |||||||    
T  15707576 aaaatagcagtttgttcaaattccgctatgctatagtgcta 15707616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 43391459 - 43391547
Alignment:
Q  100 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaaca 188  Q
    ||||||||  |||| || ||||||| ||||||||  | ||||||||||| ||||||||| |||  |||||| ||||  |||||||||||    
T  43391459 gtcaatcgcagatcgcaaaaaatagcagtttgtttgagttctgctatgcaacagtgctatagcaatgctatagccgccatttgacaaca 43391547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 49825960 - 49825928
Alignment:
Q  126 agtttgttcaaattctgctatgctacagtgcta 158  Q
    ||||||||||||||||||||||| |||||||||    
T  49825960 agtttgttcaaattctgctatgcaacagtgcta 49825928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 40677892 - 40677979
Alignment:
Q  100 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaac 187  Q
    |||||| | ||||| | ||||||||| ||||||||||||||||||||| ||  |||||| |||| || ||| |||| |||||||||||    
T  40677892 gtcaatagcggatcccggaaaatagttgtttgttcaaattctgctatgatatggtgctatagcgctgttatagccgctatttgacaac 40677979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 40877066 - 40877109
Alignment:
Q  115 cagaaaatagtagtttgttcaaattctgctatgctacagtgcta 158  Q
    |||||||||||||||||||||||||||||| ||||| |||||||    
T  40877066 cagaaaatagtagtttgttcaaattctgctttgctatagtgcta 40877109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 42440223 - 42440145
Alignment:
Q  108 tggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaa 186  Q
    |||||| ||||||| ||| |||||||||||||| |||||||||||||| || |||  |||||| |||  ||||||||||    
T  42440223 tggatcgcagaaaacagtggtttgttcaaattccgctatgctacagtgttatagcactgctatagcctctatttgacaa 42440145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 2644007 - 2643961
Alignment:
Q  99 agtcaatcgtggatcacagaaaatagtagtttgttcaaattctgcta 145  Q
    ||||||||||||||  ||| |||||| ||||||||||||||||||||    
T  2644007 agtcaatcgtggattgcagtaaatagcagtttgttcaaattctgcta 2643961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 34101507 - 34101575
Alignment:
Q  100 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgct 168  Q
    |||||||||||||  |||||||||| ||||||  ||||||| |||||||| ||||  || |||||||||    
T  34101507 gtcaatcgtggattgcagaaaatagcagtttgcacaaattccgctatgcttcagttttatagcgttgct 34101575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 24673358 - 24673404
Alignment:
Q  109 ggatcacagaaaatagtagtttgttcaaattctgctatgctacagtg 155  Q
    ||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  24673358 ggatcacagaaaatagtggtttgttcaaattcagctatgcaacagtg 24673404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 34925273 - 34925314
Alignment:
Q  117 gaaaatagtagtttgttcaaattctgctatgctacagtgcta 158  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  34925273 gaaaatagcagtttgttcaaattctgctatgctacaatgcta 34925314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 6518102 - 6518144
Alignment:
Q  115 cagaaaatagtagtttgttcaaattctgctatgctacagtgct 157  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||    
T  6518102 cagaaaatagtggtttgttcaaattctgctacgctacattgct 6518144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 8558804 - 8558838
Alignment:
Q  118 aaaatagtagtttgttcaaattctgctatgctaca 152  Q
    ||||||||||||||||||||||| |||||||||||    
T  8558804 aaaatagtagtttgttcaaattccgctatgctaca 8558838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 19130149 - 19130207
Alignment:
Q  100 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgcta 158  Q
    |||||||| ||||| |  ||||||| |||||||||||| |||||||||||| |||||||    
T  19130149 gtcaatcgcggatcccgaaaaataggagtttgttcaaaatctgctatgctatagtgcta 19130207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 3250026 - 3250062
Alignment:
Q  109 ggatcacagaaaatagtagtttgttcaaattctgcta 145  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  3250026 ggatcacagaaaatagtggtttcttcaaattctgcta 3250062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 34501942 - 34501982
Alignment:
Q  116 agaaaatagtagtttgttcaaattctgctatgctacagtgc 156  Q
    ||||||||||||||||||||  ||||||||||||| |||||    
T  34501942 agaaaatagtagtttgttcagtttctgctatgctatagtgc 34501982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 23790355 - 23790425
Alignment:
Q  100 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctat 170  Q
    ||||||||||||||| ||||| |||  ||||| ||| |||| ||||||||||||||||| |||| ||||||    
T  23790355 gtcaatcgtggatcatagaaagtagcggtttgatcacattccgctatgctacagtgctatagcgctgctat 23790425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 24276668 - 24276634
Alignment:
Q  124 gtagtttgttcaaattctgctatgctacagtgcta 158  Q
    |||||||||||||||||||||||||||| ||||||    
T  24276668 gtagtttgttcaaattctgctatgctaccgtgcta 24276634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 44622480 - 44622520
Alignment:
Q  118 aaaatagtagtttgttcaaattctgctatgctacagtgcta 158  Q
    ||||||| || |||||||||||||||||||||||| |||||    
T  44622480 aaaatagaagcttgttcaaattctgctatgctacaatgcta 44622520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 38434245 - 38434187
Alignment:
Q  100 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgcta 158  Q
    ||||||||  || ||| |||||||| |||||||||||||||||||||| ||||||||||    
T  38434245 gtcaatcgcagaacacggaaaatagcagtttgttcaaattctgctatgttacagtgcta 38434187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 45071579 - 45071639
Alignment:
Q  129 ttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaacac 189  Q
    |||||||||||||||||||||||||||||  |||  |||||| || | |||||||||||||    
T  45071579 ttgttcaaattctgctatgctacagtgctgtagcactgctatagctgctatttgacaacac 45071639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 27242720 - 27242791
Alignment:
Q  118 aaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaacac 189  Q
    ||||||| | ||| ||||||||||||||| ||||| ||||| || | || ||| ||||||||||||||||||    
T  27242720 aaaatagcaatttcttcaaattctgctatcctacaatgctatagtgctggtatagccgttatttgacaacac 27242791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 150
Target Start/End: Original strand, 41947073 - 41947108
Alignment:
Q  115 cagaaaatagtagtttgttcaaattctgctatgcta 150  Q
    ||||||||||| ||||||||||||||||||||||||    
T  41947073 cagaaaatagtggtttgttcaaattctgctatgcta 41947108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 27678775 - 27678734
Alignment:
Q  118 aaaatagtagtttgttcaaattctgctatgctacagtgctag 159  Q
    |||||||||||||||||||||| |||||||||| || |||||    
T  27678775 aaaatagtagtttgttcaaattttgctatgctatagcgctag 27678734  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 37449515 - 37449454
Alignment:
Q  102 caatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcg 163  Q
    |||||||||||  |||||||||| |||||||||||| | ||||| |||| ||||||| ||||    
T  37449515 caatcgtggattgcagaaaatagcagtttgttcaaactatgctacgctagagtgctaaagcg 37449454  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 11521801 - 11521853
Alignment:
Q  103 aatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtg 155  Q
    ||||| |||||| |||||||||  |||||||||||||| |||||| |||||||    
T  11521801 aatcgcggatcatagaaaatagctgtttgttcaaattccgctatgatacagtg 11521853  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 16495167 - 16495123
Alignment:
Q  98 aagtcaatcgtggatcacagaaaatagtagtttgttcaaattctg 142  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||||    
T  16495167 aagtcaaccgtggatcgcagaaaatagtggtttgttcaaattctg 16495123  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 38596850 - 38596787
Alignment:
Q  100 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgctagagcg 163  Q
    ||||||| |||| | || ||||||| |||||||||||||||||||| | |||||||||| ||||    
T  38596850 gtcaatcatggaccgcaaaaaatagcagtttgttcaaattctgctacgttacagtgctatagcg 38596787  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 32427058 - 32427099
Alignment:
Q  117 gaaaatagtagtttgttcaaattctgctatgctacagtgcta 158  Q
    ||||||||||||||||||||||||||| |||  |||||||||    
T  32427058 gaaaatagtagtttgttcaaattctgccatgtgacagtgcta 32427099  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 47213474 - 47213519
Alignment:
Q  111 atcacagaaaatagtagtttgttcaaattctgctatgctacagtgc 156  Q
    |||||||||||| | ||||||||||||||||| ||||| |||||||    
T  47213474 atcacagaaaattgaagtttgttcaaattctgttatgcaacagtgc 47213519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 12909574 - 12909614
Alignment:
Q  126 agtttgttcaaattctgctatgctacagtgctagagcgttg 166  Q
    |||||||||||||||||||| ||||||||| || |||||||    
T  12909574 agtttgttcaaattctgctacgctacagtgttatagcgttg 12909614  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 19984279 - 19984323
Alignment:
Q  101 tcaatcgtggatcacagaaaatagtagtttgttcaaattctgcta 145  Q
    ||||| ||||||| ||||||||||| ||||| |||||||||||||    
T  19984279 tcaattgtggatcgcagaaaatagttgtttgctcaaattctgcta 19984323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 45554117 - 45554157
Alignment:
Q  117 gaaaatagtagtttgttcaaattctgctatgctacagtgct 157  Q
    ||||||||| ||||| ||||||||||| |||||||||||||    
T  45554117 gaaaatagtggtttgctcaaattctgccatgctacagtgct 45554157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 45599615 - 45599671
Alignment:
Q  99 agtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtg 155  Q
    |||||||||||||||| |||||||||| | ||| | |||||||||||| || |||||    
T  45599615 agtcaatcgtggatcatagaaaatagtgggttggtaaaattctgctatactgcagtg 45599671  T

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Target: scaffold0223 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 10604 - 10657
Alignment:
Q  101 tcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagt 154  Q
    ||||| ||| ||| ||||||||||  |||||||||||||||||||||| |||||    
T  10604 tcaattgtgaatcgcagaaaatagcggtttgttcaaattctgctatgcaacagt 10657  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 507873 - 507832
Alignment:
Q  117 gaaaatagtagtttgttcaaattctgctatgctacagtgcta 158  Q
    |||||||| |||||||| ||||||||||||| ||||||||||    
T  507873 gaaaatagcagtttgtttaaattctgctatgttacagtgcta 507832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 3247446 - 3247406
Alignment:
Q  117 gaaaatagtagtttgttcaaattctgctatgctacagtgct 157  Q
    ||||| ||| |||||||||||||| ||||||||||||||||    
T  3247446 gaaaacagtggtttgttcaaattccgctatgctacagtgct 3247406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 20869909 - 20869965
Alignment:
Q  100 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctacagtgc 156  Q
    ||||||||  || ||| |||||||| |||||||||||||||||| | ||||||||||    
T  20869909 gtcaatcgcagaacacggaaaatagcagtttgttcaaattctgcaacgctacagtgc 20869965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 23137478 - 23137522
Alignment:
Q  118 aaaatagtagtttgttcaaattctgctatgctacagtgctagagc 162  Q
    |||||| |||||||||||||||||||||  | |||||||||||||    
T  23137478 aaaataatagtttgttcaaattctgctactcaacagtgctagagc 23137522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 669 - 617
Alignment:
Q  100 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgctatgctaca 152  Q
    |||| ||| ||||||| || |||||| ||||||||||||| ||||||||||||    
T  669 gtcagtcgcggatcacggataatagtggtttgttcaaattgtgctatgctaca 617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 651 - 695
Alignment:
Q  100 gtcaatcgtggatcacagaaaatagtagtttgttcaaattctgct 144  Q
    ||||||||| |||||||||||||||| | ||||||||||| ||||    
T  651 gtcaatcgtcgatcacagaaaatagttgattgttcaaattatgct 695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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