View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_71 (Length: 393)

Name: NF10855A_low_71
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_71
NF10855A_low_71
[»] chr8 (15 HSPs)
chr8 (153-387)||(45451029-45451263)
chr8 (25-109)||(45450896-45450980)
chr8 (22-122)||(35813037-35813137)
chr8 (19-114)||(28968953-28969048)
chr8 (22-116)||(3940961-3941055)
chr8 (26-122)||(15244601-15244697)
chr8 (22-122)||(30436069-30436170)
chr8 (22-116)||(23221785-23221879)
chr8 (19-116)||(2350412-2350509)
chr8 (26-116)||(3654033-3654123)
chr8 (21-122)||(6143511-6143612)
chr8 (22-122)||(42738563-42738656)
chr8 (24-102)||(9201726-9201804)
chr8 (25-122)||(14772683-14772774)
chr8 (21-51)||(5913354-5913384)
[»] chr5 (22 HSPs)
chr5 (153-355)||(6453685-6453887)
chr5 (21-122)||(37205280-37205381)
chr5 (22-122)||(6238586-6238686)
chr5 (22-122)||(6900296-6900396)
chr5 (22-116)||(21732014-21732108)
chr5 (22-116)||(36016549-36016643)
chr5 (25-115)||(75628-75718)
chr5 (22-116)||(9996540-9996634)
chr5 (22-116)||(42860024-42860118)
chr5 (25-122)||(31230815-31230912)
chr5 (22-122)||(38355739-38355839)
chr5 (22-116)||(6955502-6955595)
chr5 (22-109)||(1845709-1845796)
chr5 (22-122)||(4695527-4695627)
chr5 (22-122)||(33907553-33907653)
chr5 (22-122)||(3435941-3436041)
chr5 (18-102)||(4970241-4970325)
chr5 (22-116)||(10641775-10641863)
chr5 (33-116)||(35038471-35038554)
chr5 (22-89)||(24477702-24477769)
chr5 (18-94)||(36867270-36867346)
chr5 (21-114)||(38975619-38975713)
[»] chr2 (16 HSPs)
chr2 (11-122)||(26555842-26555953)
chr2 (24-122)||(4469922-4470020)
chr2 (22-122)||(21104291-21104391)
chr2 (22-118)||(40860752-40860848)
chr2 (19-122)||(42730069-42730172)
chr2 (22-116)||(40000507-40000601)
chr2 (25-122)||(38837341-38837438)
chr2 (22-122)||(9471631-9471731)
chr2 (22-122)||(29205707-29205807)
chr2 (22-116)||(25096576-25096670)
chr2 (18-122)||(5271919-5272023)
chr2 (22-122)||(17921484-17921583)
chr2 (26-122)||(38571368-38571464)
chr2 (18-122)||(15613357-15613460)
chr2 (24-110)||(20921943-20922030)
chr2 (26-102)||(15560304-15560380)
[»] chr7 (14 HSPs)
chr7 (19-122)||(35710576-35710679)
chr7 (22-122)||(10993592-10993692)
chr7 (22-116)||(1873938-1874032)
chr7 (22-116)||(23025455-23025549)
chr7 (26-122)||(49113343-49113439)
chr7 (40-122)||(41202598-41202680)
chr7 (21-122)||(31271521-31271622)
chr7 (22-102)||(4267652-4267732)
chr7 (21-109)||(7505873-7505961)
chr7 (22-114)||(17471338-17471430)
chr7 (22-114)||(17581784-17581876)
chr7 (57-116)||(19106609-19106668)
chr7 (52-122)||(39489078-39489148)
chr7 (57-111)||(33605168-33605222)
[»] chr4 (22 HSPs)
chr4 (22-122)||(43285468-43285568)
chr4 (22-122)||(17544152-17544252)
chr4 (22-122)||(52463290-52463390)
chr4 (19-102)||(32594799-32594882)
chr4 (22-116)||(951660-951754)
chr4 (24-114)||(34858316-34858406)
chr4 (22-115)||(20034004-20034097)
chr4 (21-116)||(44341776-44341871)
chr4 (22-116)||(47295872-47295966)
chr4 (22-116)||(27870304-27870398)
chr4 (22-122)||(2323511-2323611)
chr4 (22-102)||(3409835-3409915)
chr4 (11-115)||(7137651-7137755)
chr4 (18-114)||(32768383-32768479)
chr4 (18-102)||(41361976-41362060)
chr4 (22-112)||(45522799-45522889)
chr4 (21-102)||(44857024-44857105)
chr4 (21-124)||(34031043-34031146)
chr4 (18-102)||(1324077-1324161)
chr4 (43-93)||(1704514-1704564)
chr4 (22-88)||(54134212-54134278)
chr4 (22-70)||(16030492-16030540)
[»] chr1 (18 HSPs)
chr1 (22-122)||(4221852-4221952)
chr1 (21-122)||(43263174-43263275)
chr1 (18-122)||(46158359-46158463)
chr1 (22-116)||(45756955-45757048)
chr1 (22-122)||(12749876-12749976)
chr1 (22-116)||(9660538-9660632)
chr1 (22-116)||(33189318-33189412)
chr1 (22-112)||(43780885-43780975)
chr1 (22-122)||(17332082-17332181)
chr1 (22-122)||(48469626-48469726)
chr1 (39-122)||(47188277-47188360)
chr1 (57-122)||(31488879-31488944)
chr1 (23-122)||(45566539-45566637)
chr1 (26-116)||(24682295-24682385)
chr1 (39-116)||(6502010-6502087)
chr1 (22-122)||(49228501-49228602)
chr1 (40-122)||(45040096-45040178)
chr1 (22-102)||(32058147-32058227)
[»] chr3 (17 HSPs)
chr3 (21-115)||(50737162-50737256)
chr3 (21-115)||(50775599-50775693)
chr3 (22-122)||(6884301-6884401)
chr3 (22-122)||(43745887-43745987)
chr3 (22-116)||(46219396-46219490)
chr3 (22-122)||(27877817-27877917)
chr3 (22-122)||(33986117-33986217)
chr3 (31-122)||(43736570-43736661)
chr3 (21-116)||(46312157-46312252)
chr3 (33-118)||(21075611-21075696)
chr3 (26-122)||(26843539-26843635)
chr3 (21-122)||(19976416-19976518)
chr3 (57-122)||(24311723-24311788)
chr3 (21-99)||(11486222-11486300)
chr3 (25-122)||(15326275-15326366)
chr3 (19-122)||(20511247-20511348)
chr3 (76-116)||(21390517-21390557)
[»] chr6 (14 HSPs)
chr6 (22-116)||(15071099-15071193)
chr6 (20-122)||(20143581-20143683)
chr6 (20-122)||(22189156-22189258)
chr6 (21-122)||(31654905-31655007)
chr6 (21-122)||(17868449-17868550)
chr6 (21-122)||(17878232-17878333)
chr6 (32-122)||(31470975-31471065)
chr6 (22-122)||(26519857-26519957)
chr6 (22-116)||(11369257-11369352)
chr6 (21-111)||(27965828-27965918)
chr6 (22-102)||(10998046-10998126)
chr6 (22-109)||(12271431-12271518)
chr6 (19-102)||(3044997-3045080)
chr6 (22-102)||(12075876-12075956)
[»] scaffold0564 (1 HSPs)
scaffold0564 (22-122)||(9835-9935)
[»] scaffold0219 (1 HSPs)
scaffold0219 (22-122)||(16435-16529)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 153 - 387
Target Start/End: Original strand, 45451029 - 45451263
Alignment:
Q  153 aacggcatattcgttaaattaagaagatttgcaaaagccaagtgactaaaagcctacaacaacaaagaaaaacattggcagaaagaaataaaagagtgcc 252  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45451029 aacggcatattcattaaattaagaagatttgcaaaagccaagtaactacaagcctacaacaacaaagaaaaacattggcagaaagaaataaaagagtacc 45451128  T
Q  253 tcccaacccaaaagccactaaagtgcaaacaatgaatcactacctaagaaggaggaacaagaacagtacaacaaaaaacacaaatcaacaagcagaataa 352  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45451129 tcccaacccaaaagccactaaattgcaaacaatgaatcactacctaagaaggaggaacaagaacagtacaacagaaaacacaaatcaacaagcagaataa 45451228  T
Q  353 caagtaacattgtagattggcaaattgggtatgat 387  Q
    |||||||||||||||||||||||||||||| ||||    
T  45451229 caagtaacattgtagattggcaaattgggtctgat 45451263  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 45450896 - 45450980
Alignment:
Q  25 ctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggc 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  45450896 ctttttagggccgggctaaaaagccctgtttgaatatgggctggaataatggagcccgagcctggccctatacgggcttccgggc 45450980  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 35813037 - 35813137
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  35813037 gggcttttaagggccgggctaaaaagcccagtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgggccagc 35813136  T
Q  122 c 122  Q
    |    
T  35813137 c 35813137  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 28969048 - 28968953
Alignment:
Q  19 aacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacg 114  Q
    |||| |||||| ||||||| ||| ||||||| |||||||||||||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||    
T  28969048 aacgagcttttaagggccgggctgaaaagccttgtttgaatatgggctggaaaaatagagcccgagcccggccctgtacgggcttccgggctaacg 28968953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 3941055 - 3940961
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||    
T  3941055 gggcttttaagggccgggctaaaaagcccagtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacggg 3940961  T

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Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 15244697 - 15244601
Alignment:
Q  26 tttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    |||||||||||| |||||||||||| |||| ||||||||||  || ||| |||| |||| ||||||||||||||||||||||||||||||| |||||    
T  15244697 tttttagggccgggctaaaaagcccggtttaaatatgggctaaaaaaatagagcccgagtccggccctatacgggcttccgggctaacgggccagcc 15244601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 30436069 - 30436170
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatg-gagctcgagcccggccctatacgggcttccgggctaacgggtcag 120  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||   |||| |||||||||||||||||||||| ||||||||||||| |||    
T  30436069 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgggccag 30436168  T
Q  121 cc 122  Q
    ||    
T  30436169 cc 30436170  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 23221785 - 23221879
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||| ||||||||||| || ||  |||| ||||||| |||||||||||||| |||||||||||||    
T  23221785 gggcttttaagggccgggctaaaaagcccggtttcaatatgggctgcaaaaaatgagcccgagccccgccctatacgggctcccgggctaacggg 23221879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 2350509 - 2350412
Alignment:
Q  19 aacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||||||| || ||| ||| ||||||||  ||| ||||||||| |||||||| |||| ||||||||||||||||| |||| |||||||||||||    
T  2350509 aacgggctttttcggaccgggctgaaaagcccgatttaaatatgggcgggaataattgagcccgagcccggccctatacaggctcccgggctaacggg 2350412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 3654033 - 3654123
Alignment:
Q  26 tttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| ||| ||||||||||||| |||| |||||||||||||    
T  3654033 ttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgatcccggccctatacaggctcccgggctaacggg 3654123  T

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Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 6143612 - 6143511
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcag 120  Q
    |||||||||||||| || ||| ||||||||  ||| |||| ||| || |||||| |||| ||||||||||||||||| |||| ||||||||||||| |||    
T  6143612 cgggctttttagggtcgggctgaaaagcccgatttaaatacgggatgaaataatagagcccgagcccggccctatacaggctcccgggctaacgggccag 6143513  T
Q  121 cc 122  Q
    ||    
T  6143512 cc 6143511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 42738563 - 42738656
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||| |||       ||||||||||||||||| ||||||||||||| ||||    
T  42738563 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgtaaaaatagag-------ccggccctatacgggctcccgggctaacgggccagc 42738655  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 9201804 - 9201726
Alignment:
Q  24 gctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggct 102  Q
    ||||||||||||||  || ||||| || |||| |||| |||||| |||||| |||| ||||| ||||||||||||||||    
T  9201804 gctttttagggccggactgaaaagtccggtttaaatacgggctgaaataatagagcccgagctcggccctatacgggct 9201726  T

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Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 14772683 - 14772774
Alignment:
Q  25 ctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    |||| ||||||||||||||||||||  |||| |||||||||| ||||||      | ||||||| ||||||| ||||| ||||||||||||| |||||    
T  14772683 ctttgtagggccgagctaaaaagcctggtttaaatatgggctagaataa------ttgagcccgaccctatatgggctcccgggctaacgggccagcc 14772774  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 5913384 - 5913354
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccct 51  Q
    |||||||||||||||||||||||||||||||    
T  5913384 cgggctttttagggccgagctaaaaagccct 5913354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 153 - 355
Target Start/End: Complemental strand, 6453887 - 6453685
Alignment:
Q  153 aacggcatattcgttaaattaagaagatttgcaaaagccaagtgactaaaagcctacaacaacaaagaaaaacattggcagaaagaaataaaagagtgcc 252  Q
    |||||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6453887 aacggcatattcattaaattaggaagatttgcaaaagccaagtaactacaagcctacaacaacaaagaaaaacattggcagaaagaaataaaagagtgcc 6453788  T
Q  253 tcccaacccaaaagccactaaagtgcaaacaatgaatcactacctaagaaggaggaacaagaacagtacaacaaaaaacacaaatcaacaagcagaataa 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6453787 tcccaacccaaaagccactaaagtgcaaacaatgaatcactacctaagaaggaggaacaagaacagtacaacaaaaagcacaaatcaacaagcagaataa 6453688  T
Q  353 caa 355  Q
    |||    
T  6453687 caa 6453685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 37205280 - 37205381
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcag 120  Q
    ||||||||||||||||| |||||||||||| |||| |||| |||||| |||||| |||| |||||| ||||||||||||||| ||||||||||||| |||    
T  37205280 cgggctttttagggccgggctaaaaagcccggtttaaatacgggctgaaataatagagcccgagcctggccctatacgggctcccgggctaacgggccag 37205379  T
Q  121 cc 122  Q
    ||    
T  37205380 cc 37205381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 6238686 - 6238586
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  6238686 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgggccagc 6238587  T
Q  122 c 122  Q
    |    
T  6238586 c 6238586  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 6900396 - 6900296
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  6900396 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgggccagc 6900297  T
Q  122 c 122  Q
    |    
T  6900296 c 6900296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 21732108 - 21732014
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||    
T  21732108 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacggg 21732014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 36016643 - 36016549
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||    
T  36016643 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacggg 36016549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 75718 - 75628
Alignment:
Q  25 ctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgg 115  Q
    ||||||||||||| | ||||||||||| ||| |||| ||||||||||||| |||| |||||||||||||||||||||| || |||||||||    
T  75718 ctttttagggccgggttaaaaagccctatttaaataagggctggaataattgagcccgagcccggccctatacgggctcccaggctaacgg 75628  T

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Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 9996634 - 9996540
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||| | |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||    
T  9996634 gggcttttaagggctgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacggg 9996540  T

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Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 42860024 - 42860118
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||| ||||||||||||||||| |||||||||||||    
T  42860024 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagtccggccctatacgggctcccgggctaacggg 42860118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 31230912 - 31230815
Alignment:
Q  25 ctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    |||||||| |||| |||||||| ||| |||| |||||||||||||| ||| | || |||||||||||||||||||||| ||||||||||||| |||||    
T  31230912 ctttttagagccgggctaaaaaacccggtttaaatatgggctggaaaaatagggcccgagcccggccctatacgggctcccgggctaacgggccagcc 31230815  T

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Target: chr5; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 38355739 - 38355839
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| |||| || |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| || |||||||||| ||||    
T  38355739 gggcttttaagggtcgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctccctggctaacgggccagc 38355838  T
Q  122 c 122  Q
    |    
T  38355839 c 38355839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 6955502 - 6955595
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||| ||||| |||||||||||||    
T  6955502 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctata-gggctcccgggctaacggg 6955595  T

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Target: chr5; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 1845796 - 1845709
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctg-gaataatggagctcgagcccggccctatacgggcttccgggc 109  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||  |||||| |||| |||||||||||||||||||||| ||||||    
T  1845796 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaataat-gagcccgagcccggccctatacgggctcccgggc 1845709  T

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Target: chr5; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 4695527 - 4695627
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||  | ||    || |||||||||||||||||||||| ||||||||||||| ||||    
T  4695527 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgctaaaaacaggcccgagcccggccctatacgggctcccgggctaacgggccagc 4695626  T
Q  122 c 122  Q
    |    
T  4695627 c 4695627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 33907553 - 33907653
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| ||||||||||||  ||| |||||||||||||| ||| |||| |||||||| |||| |||||||| ||| ||||||||| ||||    
T  33907553 gggcttttaagggccgggctaaaaagcccgatttaaatatgggctggaaaaatagagcccgagcccgaccctttacgggctcccgagctaacgggccagc 33907652  T
Q  122 c 122  Q
    |    
T  33907653 c 33907653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 3435941 - 3436041
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| |||| ||  ||||||||||| |||||||||||| |||||| ||| |||| | ||| ||||||| |||||||| || |||||||||| ||||    
T  3435941 gggcttttaagggtcggactaaaaagcccagtttgaatatggactggaaaaatagagcccaagcgcggccctttacgggctccctggctaacgggccagc 3436040  T
Q  122 c 122  Q
    |    
T  3436041 c 3436041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 4970241 - 4970325
Alignment:
Q  18 caacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggct 102  Q
    |||||||||||| ||||||| | |||||||||| |||| |||||| ||||||| | | |||| |||||||||||| |||||||||    
T  4970241 caacgggcttttgagggccgggttaaaaagcccagtttaaatatgagctggaaaattagagcccgagcccggcccaatacgggct 4970325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 10641775 - 10641863
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||        ||||||||||||||||||||| |||||||||||||    
T  10641775 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaa------atgagcccggccctatacgggctcccgggctaacggg 10641863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 35038471 - 35038554
Alignment:
Q  33 ggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    ||||| |||||||||  | |||||||||||||||| || ||  |||| |||||||| ||||||||||||| |||||||||||||    
T  35038471 ggccgggctaaaaagttcggtttgaatatgggctgcaaaaaatgagcccgagcccgaccctatacgggctcccgggctaacggg 35038554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 24477769 - 24477702
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccgg 89  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||    
T  24477769 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccgg 24477702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 36867346 - 36867270
Alignment:
Q  18 caacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggcccta 94  Q
    ||||||||||||||||| ||  || ||||||||  ||| |||| ||| ||||||||| |||| ||||||||||||||    
T  36867346 caacgggctttttagggtcggactgaaaagcccgatttaaatacgggttggaataattgagcccgagcccggcccta 36867270  T

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Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 38975619 - 38975713
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttg-aatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacg 114  Q
    |||||||| | |||||| || ||||||||| |  || ||||||| || ||| ||| |||| |||||||||||||||||||||| | |||||||||    
T  38975619 cgggctttatcgggccgggccaaaaagcccggggtgtaatatggactcgaaaaatagagcccgagcccggccctatacgggctcctgggctaacg 38975713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 26555842 - 26555953
Alignment:
Q  11 ggtcgtacaacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggct 110  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||    
T  26555842 ggtcggacaacgggctttttagggccgggctaaaaagccctgtttaaatatgggctgaaataatggagcccgagcccggccctatacaggctcccgggct 26555941  T
Q  111 aacgggtcagcc 122  Q
    |||||| |||||    
T  26555942 aacgggccagcc 26555953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 4469922 - 4470020
Alignment:
Q  24 gctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    |||||||||| ||| |||||||||  |||||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||| |||||    
T  4469922 gctttttaggcccgggctaaaaagatctgtttgaatatggactgaaataatggagcccgagcccggccctatacgggctcccgggctaacgggccagcc 4470020  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 21104391 - 21104291
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  21104391 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgggccagc 21104292  T
Q  122 c 122  Q
    |    
T  21104291 c 21104291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 40860752 - 40860848
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtc 118  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||||    
T  40860752 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgggtc 40860848  T

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Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 42730069 - 42730172
Alignment:
Q  19 aacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtc 118  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||||||| || ||| |||| ||||||||||||| |||| |||||| |||||||||| |    
T  42730069 aacgggcttttaagggccgggctgaaaagccctgtttgaatatgggctgaaaaaatagagcccgagcccggccctgtacgtgcttccaggctaacgggcc 42730168  T
Q  119 agcc 122  Q
    ||||    
T  42730169 agcc 42730172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 40000507 - 40000601
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||    
T  40000507 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacggg 40000601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 38837341 - 38837438
Alignment:
Q  25 ctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    ||||||||||||| |||||||||||| |||| ||||  ||||| |||||| |||| |||||||||||||||||||||| ||||||||||||| |||||    
T  38837341 ctttttagggccgggctaaaaagcccggtttaaatacaggctgaaataatagagcccgagcccggccctatacgggctcccgggctaacgggccagcc 38837438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 9471731 - 9471631
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||| ||| |||||||||||| |||||||||||||||| || ||| |||| ||||||||||||| |||||||| ||||||||||||| ||||    
T  9471731 gggcttttaaggcccgggctaaaaagcccagtttgaatatgggctgaaaaaatagagcccgagcccggccctttacgggctcccgggctaacggggcagc 9471632  T
Q  122 c 122  Q
    |    
T  9471631 c 9471631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 29205707 - 29205807
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||| ||| ||||||||||||| ||||    
T  29205707 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgagctcccgggctaacgggccagc 29205806  T
Q  122 c 122  Q
    |    
T  29205807 c 29205807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 25096670 - 25096576
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctg-gaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||  |||||| |||| |||||||||||||||||||||| |||||||||||||    
T  25096670 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaataat-gagcccgagcccggccctatacgggctcccgggctaacggg 25096576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 5272023 - 5271919
Alignment:
Q  18 caacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggt 117  Q
    |||||| |||||||| | || ||| ||||||||  ||| ||||||| | |||| |||||||| |||||||||||||||||||||||| |||||||||||     
T  5272023 caacggtctttttagagtcgggctgaaaagcccgctttaaatatggaccggaaaaatggagcccgagcccggccctatacgggcttctgggctaacgggc 5271924  T
Q  118 cagcc 122  Q
    |||||    
T  5271923 cagcc 5271919  T

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Target: chr2; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 17921583 - 17921484
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||  ||||||||||||||||||| ||| |||| ||||||||||||| | |||||| | ||||||||||| ||||    
T  17921583 gggcttttaagggccgggctaaaaagcctggtttgaatatgggctggaa-aatagagcccgagcccggccctttgcgggctcctgggctaacgggccagc 17921485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 38571464 - 38571368
Alignment:
Q  26 tttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    |||||||||| | ||||||||||||  ||| |||| |||||| |||||| |||||||||||||||||||||||||||  ||| |||||||| |||||    
T  38571464 tttttagggctgggctaaaaagcccgatttaaatacgggctgtaataatagagctcgagcccggccctatacgggctctcggactaacgggccagcc 38571368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 15613357 - 15613460
Alignment:
Q  18 caacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggt 117  Q
    |||||||||||| ||||||| |||||||  ||| |||| |||||||||   || ||| |||| |||||||||||||||||||||| |||||||||||||     
T  15613357 caacgggcttttgagggccgggctaaaat-cccggtttaaatatgggcctaaaaaatagagcccgagcccggccctatacgggctcccgggctaacgggc 15613455  T
Q  118 cagcc 122  Q
    |||||    
T  15613456 cagcc 15613460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 20921943 - 20922030
Alignment:
Q  24 gctttttagggccgagct-aaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggct 110  Q
    ||||||| |||||||||| ||||||||| |||| |||||||||||||||||| |||| ||||  ||||||||||||| || |||||||    
T  20921943 gcttttttgggccgagctgaaaaagcccggtttaaatatgggctggaataattgagcccgagtgcggccctatacggactcccgggct 20922030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 15560304 - 15560380
Alignment:
Q  26 tttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggct 102  Q
    |||| ||||||| | |||||||||| |||||||||||||||| || ||  |||| ||||||||||||||||||||||    
T  15560304 ttttaagggccgggttaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 15560380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 35710679 - 35710576
Alignment:
Q  19 aacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtc 118  Q
    ||||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||| |    
T  35710679 aacgggctttttagggccgggctaaaaagccctatttaaataagggctggaataattgagcccgagcccggccctatacgggctcccgggctaacgggcc 35710580  T
Q  119 agcc 122  Q
    ||||    
T  35710579 agcc 35710576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 10993692 - 10993592
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  10993692 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgggccagc 10993593  T
Q  122 c 122  Q
    |    
T  10993592 c 10993592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 1874032 - 1873938
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||    
T  1874032 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacggg 1873938  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 23025549 - 23025455
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||    
T  23025549 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacggg 23025455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 49113439 - 49113343
Alignment:
Q  26 tttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    |||| ||||||| ||||||||  || ||||||||||||||||||| ||| |||| ||||||||||||| |||||||| ||||||||||||| |||||    
T  49113439 ttttaagggccgggctaaaaaatccggtttgaatatgggctggaaaaatagagcccgagcccggccctttacgggctcccgggctaacgggccagcc 49113343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 41202680 - 41202598
Alignment:
Q  40 ctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    ||||||||||| ||||||||||||||||||| ||| |||| ||||||||||||| |||| ||| ||||||||||||| |||||    
T  41202680 ctaaaaagcccggtttgaatatgggctggaaaaatagagcccgagcccggccctttacgagctcccgggctaacgggccagcc 41202598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 31271521 - 31271622
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcag 120  Q
    |||||||||| |||||| ||||||||| || |||| |||| |||||| |||| | |||| |||||||||||||||||||||| |||||||| |||| |||    
T  31271521 cgggctttttcgggccgggctaaaaagtccggtttaaatacgggctgaaatattagagcccgagcccggccctatacgggctcccgggctatcgggccag 31271620  T
Q  121 cc 122  Q
    ||    
T  31271621 cc 31271622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 4267732 - 4267652
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggct 102  Q
    |||||||| |||| || |||||||||||| ||||||||||||||||||| ||| |||| ||||||||||||| ||||||||    
T  4267732 gggcttttaagggtcgggctaaaaagcccggtttgaatatgggctggaaaaatagagcccgagcccggccctttacgggct 4267652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 7505961 - 7505873
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggc 109  Q
    |||| ||||| | |||| ||||||||||||||||| |||| ||||||||||| | |||| ||||| |||||||||||||||| ||||||    
T  7505961 cgggttttttcgagccgggctaaaaagccctgtttaaatacgggctggaatattagagcccgagctcggccctatacgggctcccgggc 7505873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 17471338 - 17471430
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacg 114  Q
    |||||||| ||||||| ||||||||| || |||||||||| || ||||| ||| |||| ||||||||||||| ||||| || |||||||||||    
T  17471338 gggcttttaagggccgggctaaaaagtccggtttgaatataggttggaaaaatagagcccgagcccggccctttacggactcccgggctaacg 17471430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 17581876 - 17581784
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacg 114  Q
    |||||||| ||||||| ||||||||| || |||||||||| || ||||| ||| |||| ||||||||||||| ||||| || |||||||||||    
T  17581876 gggcttttaagggccgggctaaaaagtccggtttgaatataggttggaaaaatagagcccgagcccggccctttacggactcccgggctaacg 17581784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 19106668 - 19106609
Alignment:
Q  57 aatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||    
T  19106668 aatatgggctggaataattgagcccgagcccggtcctatacgggctcccgggctaacggg 19106609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 39489078 - 39489148
Alignment:
Q  52 gtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    |||||||||||||||| || ||  |||| ||||||||||||| | |||||| ||||||||||||| |||||    
T  39489078 gtttgaatatgggctgcaaaaaatgagcccgagcccggccctcttcgggctcccgggctaacgggccagcc 39489148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 33605222 - 33605168
Alignment:
Q  57 aatatgggctggaataatggagctcgagcccggccctatacgggcttccgggcta 111  Q
    |||||||||| ||| ||| |||| ||||||||||||||| |||||| ||||||||    
T  33605222 aatatgggctcgaaaaatagagcccgagcccggccctatgcgggctcccgggcta 33605168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 43285468 - 43285568
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||| |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  43285468 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaatagagcccgagcccggccctatacgggctcccgggctaacgggccagc 43285567  T
Q  122 c 122  Q
    |    
T  43285568 c 43285568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 17544252 - 17544152
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  17544252 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgggccagc 17544153  T
Q  122 c 122  Q
    |    
T  17544152 c 17544152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 52463290 - 52463390
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| ||||||||||||  ||||||||||||||| || ||| |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  52463290 gggcttttaagggccgggctaaaaagcccgatttgaatatgggctgcaaaaatagagcccgagcccggccctatacgggctcccgggctaacgggccagc 52463389  T
Q  122 c 122  Q
    |    
T  52463390 c 52463390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 32594882 - 32594799
Alignment:
Q  19 aacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggct 102  Q
    |||||||||||| |||||| ||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  32594882 aacgggctttttcgggccgggctgaaaagcccggtttaaatatgggctggaataattgagctcgagcccggccctatacgggct 32594799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 951754 - 951660
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||    
T  951754 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacggg 951660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 34858316 - 34858406
Alignment:
Q  24 gctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacg 114  Q
    |||||| ||||||| ||| ||||||| |||||||||||||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||    
T  34858316 gcttttaagggccgggctgaaaagccttgtttgaatatgggctggaaaaatagagcccgagcccggccctgtacgggcttccgggctaacg 34858406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 20034004 - 20034097
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgg 115  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| ||||||||||||    
T  20034004 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgg 20034097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 44341871 - 44341776
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    ||||||||||||| ||| ||| |||||||| |||| |||| |||||| |||||| |||| |||||||||||||||||||||| |||||||||||||    
T  44341871 cgggctttttaggaccgggctgaaaagcccggtttaaatacgggctgaaataatagagcccgagcccggccctatacgggctcccgggctaacggg 44341776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 47295966 - 47295872
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||  |||||||||||||    
T  47295966 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggcccccgggctaacggg 47295872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 27870398 - 27870304
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||| | || ||  |||| |||||||||||||||||||||| ||||||| |||||    
T  27870398 gggcttttaagggccgggctaaaaagcccggtttgaatatgggccgcaaaaaatgagcccgagcccggccctatacgggctcccgggctgacggg 27870304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 2323511 - 2323611
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| |||| || |||||||| ||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| ||||||||| ||| ||||    
T  2323511 gggcttttaagggtcgggctaaaaaacccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaatgggccagc 2323610  T
Q  122 c 122  Q
    |    
T  2323611 c 2323611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 3409835 - 3409915
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggct 102  Q
    |||||||| ||||||| |||||||||||  |||||||||||||||| || ||| |||| ||||||||||||||||||||||    
T  3409835 gggcttttaagggccgggctaaaaagcctggtttgaatatgggctgcaaaaatagagcccgagcccggccctatacgggct 3409915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 7137651 - 7137755
Alignment:
Q  11 ggtcgtacaacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggct 110  Q
    ||||| |||| |||||||||| ||  | ||||||||| |||||||||||||| |||| |||||| |||   ||||||||||||||||||||| ||||| |    
T  7137651 ggtcggacaatgggctttttaaggttgggctaaaaagtcctgtttgaatatgtgctgaaataatcgagtctgagcccggccctatacgggctcccgggtt 7137750  T
Q  111 aacgg 115  Q
    |||||    
T  7137751 aacgg 7137755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 32768479 - 32768383
Alignment:
Q  18 caacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacg 114  Q
    |||||| ||||| ||||||| ||||||||||||  ||| |||||||||  ||| ||| |||| ||||| |||||||||||||||| |||||||||||    
T  32768479 caacggacttttgagggccgggctaaaaagcccgatttaaatatgggcctgaaaaatagagcccgagcacggccctatacgggctcccgggctaacg 32768383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 41362060 - 41361976
Alignment:
Q  18 caacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggct 102  Q
    |||||||||||||| ||||| |||||| | |||| ||| |||| ||||||||||||| |||| ||||||||||||||||| ||||    
T  41362060 caacgggctttttaaggccgggctaaacatccctatttaaataagggctggaataattgagcccgagcccggccctatacaggct 41361976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 45522889 - 45522799
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaa 112  Q
    |||||||| ||||||| |||||||||||| ||||||||||||  || || ||  |||| |||||||||||||||||||||| || ||||||    
T  45522889 gggcttttaagggccgggctaaaaagcccggtttgaatatggattgcaaaaaatgagcccgagcccggccctatacgggctcccaggctaa 45522799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 44857024 - 44857105
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggct 102  Q
    ||||| ||||||| ||| ||||| |||||| |||| |||| ||||||||||||| || || |||||||||||||||||||||    
T  44857024 cgggcattttaggaccgggctaataagcccggtttaaatacgggctggaataatagatcttgagcccggccctatacgggct 44857105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 34031146 - 34031043
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcag 120  Q
    |||||||| | ||||||  | |||||||||||||  || ||||||  ||||| | |||| ||||||||||||||||| |||| ||||||||||||| |||    
T  34031146 cgggctttatcgggccggaccaaaaagccctgttgaaaaatgggcatgaatattagagcccgagcccggccctatacaggctcccgggctaacgggccag 34031047  T
Q  121 cctg 124  Q
    ||||    
T  34031046 cctg 34031043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 1324077 - 1324161
Alignment:
Q  18 caacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggct 102  Q
    ||||| ||||||||||||||  || |||||||| |||||||||||  || ||| |||||||| |||| | |||||||||||||||    
T  1324077 caacgagctttttagggccggactgaaaagcccggtttgaatatgaacttgaaaaatggagcccgagtctggccctatacgggct 1324161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 1704514 - 1704564
Alignment:
Q  43 aaaagccctgtttgaatatgggctggaataatggagctcgagcccggccct 93  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||| |||||    
T  1704514 aaaagccctgtttgaatatgggctggaaaaatagagcccgagcccagccct 1704564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 54134212 - 54134278
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccg 88  Q
    |||||||  ||||||| |||||||||||| |||||||||||||||| || ||  |||| ||||||||    
T  54134212 gggctttcaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccg 54134278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 16030540 - 16030492
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaa 70  Q
    |||||||| |||  || |||||||||||| |||||||||||||||||||    
T  16030540 gggcttttaaggaacgggctaaaaagcccggtttgaatatgggctggaa 16030492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 4221952 - 4221852
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||||||||||| |||||||||||| |||| |||||||||||||| ||| |||| |||||||||||||||||||||| ||| ||||||||| ||||    
T  4221952 gggctttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagagcccgagcccggccctatacgggctcccgagctaacgggccagc 4221853  T
Q  122 c 122  Q
    |    
T  4221852 c 4221852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 43263174 - 43263275
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcag 120  Q
    |||||||||||||||||  ||||||||||| |||| |||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||| ||| |||    
T  43263174 cgggctttttagggccggactaaaaagcccggtttaaatacgggctgaaataatagagctcgagcccggccctatacgggctcccgggctaatgggccag 43263273  T
Q  121 cc 122  Q
    ||    
T  43263274 cc 43263275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 46158463 - 46158359
Alignment:
Q  18 caacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggt 117  Q
    |||||||||||| ||||||| |||||||||||| |||| |||||||||  ||| ||| |||| |||||||||||||||||||||| |||||||||||||     
T  46158463 caacgggcttttgagggccgggctaaaaagcccggtttaaatatgggcctgaaaaatagagcccgagcccggccctatacgggctcccgggctaacgggc 46158364  T
Q  118 cagcc 122  Q
    |||||    
T  46158363 cagcc 46158359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 45756955 - 45757048
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||| |||| |||||||||||||||||||||| |||||||||||||    
T  45756955 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaat-gagcccgagcccggccctatacgggctcccgggctaacggg 45757048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 12749976 - 12749876
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| ||||||||||||| | |||||| ||||||||||||| ||||    
T  12749976 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctcttcgggctcccgggctaacgggccagc 12749877  T
Q  122 c 122  Q
    |    
T  12749876 c 12749876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 9660538 - 9660632
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||  | |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||    
T  9660538 gggcttttaagggttgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacggg 9660632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 33189412 - 33189318
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||  |||| ||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||    
T  33189412 gggcttttaagggccgggctaaaaagccaggtttaaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacggg 33189318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 43780885 - 43780975
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaa 112  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||| ||||||||||| |||||||||    
T  43780885 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggctctatacgggctcccgggctaa 43780975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 17332181 - 17332082
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||  ||||||||||||| ||||| ||| |||| ||||||||||||| |||||||| | ||||||||||| ||||    
T  17332181 gggcttttaagggccgggctaaaaagccg-gtttgaatatgggttggaaaaatagagcccgagcccggccctttacgggctcctgggctaacgggccagc 17332083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 48469626 - 48469726
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||| ||| |||||||||||  |||||||| |||||||||| ||| |||| | ||||||||||| ||||||||| |||||||||||| ||||    
T  48469626 gggcttttaaggaccgggctaaaaagcctggtttgaatttgggctggaaaaatagagcccaagcccggccctttacgggctttcgggctaacgggacagc 48469725  T
Q  122 c 122  Q
    |    
T  48469726 c 48469726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 47188277 - 47188360
Alignment:
Q  39 gctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||| | ||||||||||||| |||||    
T  47188277 gctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggttcccgggctaacgggccagcc 47188360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 31488879 - 31488944
Alignment:
Q  57 aatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    |||||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||| |||||    
T  31488879 aatatgggctggaataattgagcttgaacccggccctatacgggctcccgggctaacgggccagcc 31488944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 45566637 - 45566539
Alignment:
Q  23 ggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||| ||| ||| |||| |||||||||| || |||||||| || ||||||| || |||||    
T  45566637 ggcttttaagggccgggctaaaaagcccggtttgaatatgggct-gaaaaatagagcccgagcccggctctttacgggctccccggctaacaggccagcc 45566539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 24682295 - 24682385
Alignment:
Q  26 tttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||||||| | | |||||||| | || ||||||||||||||| || |||| ||||||||| |||||||||||  |||||||||||||    
T  24682295 tttttagggccgggatgaaaagcccggattaaatatgggctggaattatagagcccgagcccgggcctatacgggcacccgggctaacggg 24682385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 6502087 - 6502010
Alignment:
Q  39 gctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    ||||||||| || ||||||||||||||||||| ||| |||| |||| |||||||| ||||| || ||||||| |||||    
T  6502087 gctaaaaagtccggtttgaatatgggctggaaaaatagagcccgagtccggccctttacggactcccgggcttacggg 6502010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 49228501 - 49228602
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatat-gggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcag 120  Q
    |||||||| ||||||| ||||||||| || |||||||||| ||||||||| | | |||| ||||| ||||||| |||||||| | || |||||||| |||    
T  49228501 gggcttttgagggccgggctaaaaaggccggtttgaatatggggctggaaaagtagagcccgagctcggccctttacgggctcctggactaacgggccag 49228600  T
Q  121 cc 122  Q
    ||    
T  49228601 cc 49228602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 45040178 - 45040096
Alignment:
Q  40 ctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    ||||||| |||| ||| ||||  ||||||||| || |||| |||| |||||| |||||||||| ||||||||||||| |||||    
T  45040178 ctaaaaaaccctatttaaatacaggctggaatcatagagcccgagtccggccttatacgggctcccgggctaacgggccagcc 45040096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 32058227 - 32058147
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggct 102  Q
    |||||||| |||| || ||||||||| || |||||||||||| |||||| | | || | ||||||||||||| ||||||||    
T  32058227 gggcttttaagggtcgggctaaaaagtccagtttgaatatggactggaaaagtagaacccgagcccggccctttacgggct 32058147  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 50737162 - 50737256
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgg 115  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||||||||| ||| |||| ||||||||||||| |||||||| ||||||||||||    
T  50737162 cgggcttttaagggccgggctaaaaagcccggtttgaatatgggctggaaaaatagagcccgagcccggccctttacgggctcccgggctaacgg 50737256  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 50775693 - 50775599
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgg 115  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||||||||| ||| |||| ||||||||||||| |||||||| ||||||||||||    
T  50775693 cgggcttttaagggccgggctaaaaagcccggtttgaatatgggctggaaaaatagagcccgagcccggccctttacgggctcccgggctaacgg 50775599  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 6884301 - 6884401
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  6884301 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgggccagc 6884400  T
Q  122 c 122  Q
    |    
T  6884401 c 6884401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 43745887 - 43745987
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  43745887 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgggccagc 43745986  T
Q  122 c 122  Q
    |    
T  43745987 c 43745987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 46219490 - 46219396
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||    
T  46219490 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacggg 46219396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 27877917 - 27877817
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| |||| || |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  27877917 gggcttttaagggtcgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgggccagc 27877818  T
Q  122 c 122  Q
    |    
T  27877817 c 27877817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 33986217 - 33986117
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| |||| ||||||||||| || ||| |||| |||||||||||||||||||||| |||| |||||||| ||||    
T  33986217 gggcttttaagggccgggctaaaaagcccggttttaatatgggctgcaaaaatagagcccgagcccggccctatacgggctcccggactaacgggccagc 33986118  T
Q  122 c 122  Q
    |    
T  33986117 c 33986117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 43736661 - 43736570
Alignment:
Q  31 agggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    ||||||| |||||||||||| ||||||||||||||||||| | | |||| ||||||||||||| |||||||| ||||||||||||| |||||    
T  43736661 agggccgggctaaaaagcccagtttgaatatgggctggaaaagtagagcccgagcccggccctttacgggctcccgggctaacgggccagcc 43736570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 46312252 - 46312157
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    ||||||||| |||||||  ||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||    
T  46312252 cgggcttttaagggccggactaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacggg 46312157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 21075611 - 21075696
Alignment:
Q  33 ggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtc 118  Q
    ||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||||    
T  21075611 ggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgggtc 21075696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 26843539 - 26843635
Alignment:
Q  26 tttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    |||||||||||| |||||||||||| |||| |||||| ||||||| ||| |||  ||||||||||||||||||| || ||||||||||||| |||||    
T  26843539 tttttagggccgggctaaaaagcccagtttaaatatgtgctggaaaaatagaggccgagcccggccctatacggactcccgggctaacgggccagcc 26843635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 19976518 - 19976416
Alignment:
Q  21 cgggctttttagggccgag-ctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtca 119  Q
    |||||||||| |||||| | ||||||||||| |||| |||||| ||||||||| | |||| |||||||||||||||||||||| |||||||| |||| ||    
T  19976518 cgggctttttcgggccggggctaaaaagcccagtttaaatatgtgctggaatattagagcccgagcccggccctatacgggctcccgggctatcgggcca 19976419  T
Q  120 gcc 122  Q
    |||    
T  19976418 gcc 19976416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 24311788 - 24311723
Alignment:
Q  57 aatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    |||| |||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||    
T  24311788 aatacgggctgaaataatagagctcgagcccgaccctatacgggcttccgggcaaacgggtcagcc 24311723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 11486300 - 11486222
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgg 99  Q
    |||| |||||||| ||| |||||||||||| |||| |||| |||||||||| || |||| |||||||||||||||||||    
T  11486300 cgggttttttaggaccgggctaaaaagcccggtttaaatacgggctggaatgatagagcccgagcccggccctatacgg 11486222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 15326366 - 15326275
Alignment:
Q  25 ctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    |||| ||||||||||||||||||||  |||| |||||||||| ||||||      | ||||||| ||||||| ||||| ||||||||||||| |||||    
T  15326366 ctttgtagggccgagctaaaaagccaggtttaaatatgggctagaataa------ttgagcccgaccctatatgggctcccgggctaacgggccagcc 15326275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 20511348 - 20511247
Alignment:
Q  19 aacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtc 118  Q
    |||||| ||||||||  || | |||||| |||| ||| |||| ||||||||||||| ||||  ||||| |  |||||||||||| ||||||||||||| |    
T  20511348 aacgggttttttaggatcgggttaaaaaaccctatttaaataagggctggaataattgagcctgagccgg--cctatacgggctcccgggctaacgggcc 20511251  T
Q  119 agcc 122  Q
    ||||    
T  20511250 agcc 20511247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 21390557 - 21390517
Alignment:
Q  76 gagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  21390557 gagcccgagcccggccctatacgggctcccgggctaacggg 21390517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 15071193 - 15071099
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| |||||||||||||||||||||| |||||||||||||    
T  15071193 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacggg 15071099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 20143683 - 20143581
Alignment:
Q  20 acgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtca 119  Q
    |||||||||| ||||||| |||||||||||| |||| |||||||||  ||| ||  |||| |||||||||||||||||||||||||||||||||||| ||    
T  20143683 acgggcttttgagggccgggctaaaaagcccagtttaaatatgggcctgaaaaagagagcccgagcccggccctatacgggcttccgggctaacgggcca 20143584  T
Q  120 gcc 122  Q
    |||    
T  20143583 gcc 20143581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 22189156 - 22189258
Alignment:
Q  20 acgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtca 119  Q
    |||||||||| ||||||| |||||||||||| |||| |||||||||  ||| ||  |||| |||||||||||||||||||||||||||||||||||| ||    
T  22189156 acgggcttttgagggccgggctaaaaagcccagtttaaatatgggcctgaaaaagagagcccgagcccggccctatacgggcttccgggctaacgggcca 22189255  T
Q  120 gcc 122  Q
    |||    
T  22189256 gcc 22189258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 31654905 - 31655007
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaa-tatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtca 119  Q
    |||||| |||||||||| || ||||||||| |||| || |||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||| ||    
T  31654905 cgggctatttagggccgggccaaaaagcccggtttaaaatatgggctggaataattgagcccgagcccggccctatacgggctcccgggctaacgggcca 31655004  T
Q  120 gcc 122  Q
    |||    
T  31655005 gcc 31655007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 17868449 - 17868550
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcag 120  Q
    ||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||| ||||  ||| |||| |||||||||||| ||||||||||||| |||    
T  17868449 cgggctttttagggccgggctaaaaagccctatttaaatacgggctggaataatagagcctgagtccggtcctatacgggctcccgggctaacgggccag 17868548  T
Q  121 cc 122  Q
    ||    
T  17868549 cc 17868550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 17878232 - 17878333
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcag 120  Q
    ||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||| ||||  ||| |||| |||||||||||| ||||||||||||| |||    
T  17878232 cgggctttttagggccgggctaaaaagccctatttaaatacgggctggaataatagagcctgagtccggtcctatacgggctcccgggctaacgggccag 17878331  T
Q  121 cc 122  Q
    ||    
T  17878332 cc 17878333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 31470975 - 31471065
Alignment:
Q  32 gggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagcc 122  Q
    |||||| ||||||||||||  ||||||||||||||| || ||| |||| |||||||||||||||||||||| ||||||||||||| |||||    
T  31470975 gggccgggctaaaaagcccgatttgaatatgggctgcaaaaatagagcccgagcccggccctatacgggctcccgggctaacgggccagcc 31471065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 26519957 - 26519857
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| || ||||||||| |||||||||||||||| || ||| |||| |||||||| ||||||||||| | ||||||||||||| ||||    
T  26519957 gggcttttaagggccgggcgaaaaagcccagtttgaatatgggctgcaaaaatagagcccgagcccgaccctatacgggttcccgggctaacgggccagc 26519858  T
Q  122 c 122  Q
    |    
T  26519857 c 26519857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 11369257 - 11369352
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctg-gaataatggagctcgagcccggccctatacgggcttccgggctaacggg 116  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||  || ||  |||| |||||||||||||||||||||| |||||||||||||    
T  11369257 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaaatgagcccgagcccggccctatacgggctcccgggctaacggg 11369352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 27965828 - 27965918
Alignment:
Q  21 cgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggcta 111  Q
    |||||||||| |||||| |||||||||||| |||| |||| ||||||||||| | |||| ||||| |||||||||| ||||| ||||||||    
T  27965828 cgggcttttttgggccgggctaaaaagcccggtttaaatacgggctggaatattagagcccgagcacggccctatatgggctcccgggcta 27965918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 10998126 - 10998046
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggct 102  Q
    |||||||| ||||||| ||||||||| || |||||||||||||||| || ||  |||| ||||||||||||||||||||||    
T  10998126 gggcttttaagggccgggctaaaaagtccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 10998046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 12271431 - 12271518
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggc 109  Q
    |||||||| ||| ||| ||||||||| || |||||||||||||||| || ||| |||| ||||||||||||| |||||||| ||||||    
T  12271431 gggcttttaaggaccgggctaaaaagtccggtttgaatatgggctgaaaaaatagagcccgagcccggccctttacgggctcccgggc 12271518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 3045080 - 3044997
Alignment:
Q  19 aacgggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggct 102  Q
    ||||||||||| ||||||| ||| |||||| ||||||||||||||||||||| |||  ||| ||| ||||||||| ||| ||||    
T  3045080 aacgggcttttaagggccgggctgaaaagctctgtttgaatatgggctggaaaaataaagcccgatcccggccctgtacaggct 3044997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 12075876 - 12075956
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggct 102  Q
    |||||||| |||| || |||||||||||| ||||||||||||||| ||| ||| |||| ||||||  ||||| ||||||||    
T  12075876 gggcttttaagggtcgggctaaaaagcccggtttgaatatgggctagaaaaatagagcccgagcctagccctttacgggct 12075956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 9835 - 9935
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||  |||| ||||||||||||| | |||||| ||||||||||||| ||||    
T  9835 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctcttcgggctcccgggctaacgggccagc 9934  T
Q  122 c 122  Q
    |    
T  9935 c 9935  T

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Target: scaffold0219 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 16435 - 16529
Alignment:
Q  22 gggctttttagggccgagctaaaaagccctgtttgaatatgggctggaataatggagctcgagcccggccctatacgggcttccgggctaacgggtcagc 121  Q
    |||||||| |||| || |||||||||||| |||||||||||||||| || ||  ||||      ||||||||||||||||| ||||||||||||| ||||    
T  16435 gggcttttaagggtcgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagc------ccggccctatacgggctcccgggctaacgggccagc 16528  T

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