View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_72 (Length: 392)
Name: NF10855A_low_72
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_72 |
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| [»] scaffold0041 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 97765 - 97391
Alignment:
| Q |
20 |
catcgtcaacctgcattgtcgcgccgctagtggactct--taaaattgtcaacctcctagcctttcagatgaagtctctgaaagagcatcaaatatatta |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
97765 |
catcgtcaacctgcattgtcgctccgctagtggactctattaaaattgtcaacctcctagcctttcagatgaagtctctgaaagagcatcaaatatatta |
97666 |
T |
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| Q |
118 |
ttaacacatataatatatcaatttctagtagaaagattctcaattttattcattcataccagaatgtttcatctgctaatgtttctcctgccaaagttta |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
97665 |
ataacacatatcatatatcaatttctagtagaaagattctcaattttattcattcataccagaatgtttcatctgctaatgtttctcctgccaaagttta |
97566 |
T |
|
| Q |
218 |
ttcgcattggttcttaggattccactcaaatctctcatcagaggaacgtgtcggcaggccttgtagatgaagatcagacaaatgattagtcattttcttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
97565 |
ttcgcattggttcttaggattccactcaaatctctcatcagaggaacgtgtcggcaggccttgtagatgaagatcagacaaatgattagtcattttcttc |
97466 |
T |
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| Q |
318 |
tcagaagtttcatttccagcgtcaatttgtattgtttggccaaaaagcatgagctggtgcggctttgcatgatcc |
392 |
Q |
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| T |
97465 |
tcggaagtttcatttccagcgtcaatttgtattgtttggccaaaaagcacgagctggtgcggctttgcatgatcc |
97391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 35 - 392
Target Start/End: Complemental strand, 89910 - 89552
Alignment:
| Q |
35 |
ttgtcgcgccgctagtggactc--ttaaaattgtcaacctcctagcctttcagatgaagtctctgaaagagcatcaaatatattattaacacatataata |
132 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||| |||| ||||||||||||||||||| | |||||| ||||||| || |||| ||| |
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| T |
89910 |
ttgtcgcgccgctagtggaatccattaaaattgtcaacctcctagcttttctgatgaagtctctgaaagagaaacaaatagattattatcatatatcata |
89811 |
T |
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| Q |
133 |
tatcaatttctagtagaaagattctcaattttattcattcataccagaatgtttcatctgctaatgtttctcctgccaaagtttattcgcattggttctt |
232 |
Q |
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||||||||||||||||||||| || |||||||||||||| |||| ||||||||||||| ||||||||||||||||||| |||| |||| |||||||| |
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| T |
89810 |
aatcaatttctagtagaaagatactaaattttattcattcttacctgaatgtttcatct-ctaatgtttctcctgccaatgtttcttcgtgttggttctc |
89712 |
T |
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| Q |
233 |
aggattccactcaaatctctcatcagaggaacgtgtcggcaggccttgtagatgaagatcagacaaatgattagtcattttcttctcagaagtttcattt |
332 |
Q |
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|| ||||||||| || ||| ||||||| || | || || ||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| |
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| T |
89711 |
agcattccactcgaacctcgcatcagatgatcttgacgacaggccttgtagatgaagatcagacaaatgattagacattttcttctcggaattttcattt |
89612 |
T |
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| Q |
333 |
ccagcgtcaatttgtattgtttggccaaaaagcatgagctggtgcggctttgcatgatcc |
392 |
Q |
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| T |
89611 |
ccagcgtcaacttgtattgtttggccaaaaagcacaagttggtgcggctttgcatgatcc |
89552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 392
Target Start/End: Original strand, 40868517 - 40868891
Alignment:
| Q |
20 |
catcgtcaacctgcattgtcgcgccgctagtggactct--taaaattgtcaacctcctagcctttcagatgaagtctctgaaagagcatcaaatatatta |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40868517 |
catcgtcaacctgcattgtcgctccgctagtggactctattaaaattgtcaacctcctagcctttcagatgaagtctctgaaagagcatcaaatatatta |
40868616 |
T |
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| Q |
118 |
ttaacacatataatatatcaatttctagtagaaagattctcaattttattcattcataccagaatgtttcatctgctaatgtttctcctgccaaagttta |
217 |
Q |
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| T |
40868617 |
ataacacatatcatatatcaatttctagtagaaagattctcaattttattcattcataccagaatgtttcatctgctaatgtttctcctgccaaagttta |
40868716 |
T |
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| Q |
218 |
ttcgcattggttcttaggattccactcaaatctctcatcagaggaacgtgtcggcaggccttgtagatgaagatcagacaaatgattagtcattttcttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40868717 |
ttcgcattggttcttaggattccactcaaatctctcatcagaggaacgtgtcggcaggccttgtagatgaagatcagacaaatgattagtcattttcttc |
40868816 |
T |
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| Q |
318 |
tcagaagtttcatttccagcgtcaatttgtattgtttggccaaaaagcatgagctggtgcggctttgcatgatcc |
392 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40868817 |
tcggaagtttcatttccagcgtcaatttgtattgtttggccaaaaagcacgagctggtgcggctttgcatgatcc |
40868891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 35 - 392
Target Start/End: Original strand, 40876373 - 40876731
Alignment:
| Q |
35 |
ttgtcgcgccgctagtggactc--ttaaaattgtcaacctcctagcctttcagatgaagtctctgaaagagcatcaaatatattattaacacatataata |
132 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||| |||| ||||||||||||||||||| | |||||| ||||||| || |||| ||| |
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| T |
40876373 |
ttgtcgcgccgctagtggaatccattaaaattgtcaacctcctagcttttctgatgaagtctctgaaagagaaacaaatagattattatcatatatcata |
40876472 |
T |
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| Q |
133 |
tatcaatttctagtagaaagattctcaattttattcattcataccagaatgtttcatctgctaatgtttctcctgccaaagtttattcgcattggttctt |
232 |
Q |
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||||||||||||||||||||| || |||||||||||||| |||| ||||||||||||| ||||||||||||||||||| |||| |||| |||||||| |
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| T |
40876473 |
aatcaatttctagtagaaagatactaaattttattcattcttacctgaatgtttcatct-ctaatgtttctcctgccaatgtttcttcgtgttggttctc |
40876571 |
T |
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| Q |
233 |
aggattccactcaaatctctcatcagaggaacgtgtcggcaggccttgtagatgaagatcagacaaatgattagtcattttcttctcagaagtttcattt |
332 |
Q |
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|| ||||||||| || ||| ||||||| || | || || ||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| |
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| T |
40876572 |
agcattccactcgaacctcgcatcagatgatcttgacgacaggccttgtagatgaagatcagacaaatgattagacattttcttctcggaattttcattt |
40876671 |
T |
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| Q |
333 |
ccagcgtcaatttgtattgtttggccaaaaagcatgagctggtgcggctttgcatgatcc |
392 |
Q |
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|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
40876672 |
ccagcgtcaacttgtattgtttggccaaaaagcacaagttggtgcggctttgcatgatcc |
40876731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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