View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_78 (Length: 380)
Name: NF10855A_low_78
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_78 |
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| [»] scaffold0041 (4 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 97747 - 98025
Alignment:
| Q |
7 |
acaatgcaggttgacgatggaggatcaacaagaagaagaaaaaaccaccagttaaacttagagctgaatgatcaaattactctattaccaatttgacata |
106 |
Q |
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| T |
97747 |
acaatgcaggttgacgatggaggatcaacaagaagaaaaaaaaaccaccagttaaacttagagctgaatgatcaaattactctattaccaatttgacaca |
97846 |
T |
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| Q |
107 |
ttacccttcctgtagcaagaattttgnnnnnnnnnntcccttttctttaggattatataatatcactttaaatatgattagttttataggaatttggcaa |
206 |
Q |
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| T |
97847 |
ttacccttcctgtagcaagaattttgaaaaaaaaa-tcccttttctttaggattatataatatcactttaaatatgattagttttataggaatttggcta |
97945 |
T |
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| Q |
207 |
tgtgttccaactctttgacaatttattccgatgcaggtattcatgtagttgattgttaggaaattggtgcatagttgcat |
286 |
Q |
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| T |
97946 |
tgtgttccaactctttgacaatttattccgatgcaggtattcatgtagttgattgttaggaaattggtgcatagttgcat |
98025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 286 - 373
Target Start/End: Original strand, 98064 - 98154
Alignment:
| Q |
286 |
tactgtaatagtacaaatcacggttgtattcgtaccaattgcaatactata---aatggtttgtcacaatgaaacttctaaataactccaa |
373 |
Q |
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| T |
98064 |
tactgtaatagtacaaatcacggttgtattcgtaccaattgcaatactataaataatggtttgtcacaatgaaacttctaaataactccaa |
98154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 89912 - 90021
Alignment:
| Q |
25 |
ggaggatcaacaagaagaagaa-aaaaccaccagttaaact-tagagctgaatgatcaaattactctattaccaatttgacatattacccttcctgtagc |
122 |
Q |
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| T |
89912 |
ggaggatcagcaagaaaaaaaagaaaaccaccagttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagc |
90011 |
T |
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| Q |
123 |
aagaattttg |
132 |
Q |
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|||||||||| |
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| T |
90012 |
aagaattttg |
90021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 90338 - 90379
Alignment:
| Q |
245 |
attcatgtagttgattgttaggaaattggtgcatagttgcat |
286 |
Q |
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| T |
90338 |
attcatgtagttgattgttaggaagttggtgcatagttgcat |
90379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 40868535 - 40868257
Alignment:
| Q |
7 |
acaatgcaggttgacgatggaggatcaacaagaagaagaaaaaaccaccagttaaacttagagctgaatgatcaaattactctattaccaatttgacata |
106 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40868535 |
acaatgcaggttgacgatggaggatcaacaagaagaaaaaaaaaccaccagttaaacttagagctgaatgatcaaattactctattaccaatttgacaca |
40868436 |
T |
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| Q |
107 |
ttacccttcctgtagcaagaattttgnnnnnnnnnntcccttttctttaggattatataatatcactttaaatatgattagttttataggaatttggcaa |
206 |
Q |
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| T |
40868435 |
ttacccttcctgtagcaagaattttgaaaaaaaaa-tcccttttctttaggattatataatatcactttaaatatgattagttttataggaatttggcta |
40868337 |
T |
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| Q |
207 |
tgtgttccaactctttgacaatttattccgatgcaggtattcatgtagttgattgttaggaaattggtgcatagttgcat |
286 |
Q |
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| T |
40868336 |
tgtgttccaactctttgacaatttattccgatgcaggtattcatgtagttgattgttaggaaattggtgcatagttgcat |
40868257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 286 - 373
Target Start/End: Complemental strand, 40868218 - 40868128
Alignment:
| Q |
286 |
tactgtaatagtacaaatcacggttgtattcgtaccaattgcaatactata---aatggtttgtcacaatgaaacttctaaataactccaa |
373 |
Q |
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| T |
40868218 |
tactgtaatagtacaaatcacggttgtattcgtaccaattgcaatactataaataatggtttgtcacaatgaaacttctaaataactccaa |
40868128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 40876371 - 40876262
Alignment:
| Q |
25 |
ggaggatcaacaagaagaagaa-aaaaccaccagttaaact-tagagctgaatgatcaaattactctattaccaatttgacatattacccttcctgtagc |
122 |
Q |
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| T |
40876371 |
ggaggatcagcaagaaaaaaaagaaaaccaccagttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagc |
40876272 |
T |
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| Q |
123 |
aagaattttg |
132 |
Q |
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|||||||||| |
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| T |
40876271 |
aagaattttg |
40876262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 40875945 - 40875904
Alignment:
| Q |
245 |
attcatgtagttgattgttaggaaattggtgcatagttgcat |
286 |
Q |
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| T |
40875945 |
attcatgtagttgattgttaggaagttggtgcatagttgcat |
40875904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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