View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_80 (Length: 380)

Name: NF10855A_low_80
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_80
NF10855A_low_80
[»] chr1 (1 HSPs)
chr1 (4-328)||(32834041-32834358)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 328
Target Start/End: Original strand, 32834041 - 32834358
Alignment:
Q  4 aagaagatgaatgaagagtggttgattggttttattatatatnnnnnnnngtggggtgggggtgtgagttgcacacgtttggattcggaaacagaaagaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32834041 aagaagatgaatgaagagtggttgattggttttattatatatataaaaaagtggggtgggggtgtgagatgcacacgtttggattcggaaacagaaagaa 32834140  T
Q  104 aggatcaagtcaggtcatccacttattattcaaacaaacatggatggctccacctatctgtttctctctgtcttacacctcgacttgcctgcctattctt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32834141 aggatcaagtcaggtcatccacttattattcaaacaaacatggatggctccacctatctgtttctctctgtcttacacctcgacttgcctgcctattctt 32834240  T
Q  204 catatctttaacagtaaatctattccaaacaagttataa---ctt--aaaagtgattgttttcttttaaaaatgtaatttttcaggggaaaatatgtaag 298  Q
    || |||||| |||||||||||||||||||||||||||||   |||  ||||||||||||||| |||| ||||||||||||           |||||||||    
T  32834241 caaatcttttacagtaaatctattccaaacaagttataataacttctaaaagtgattgttttatttttaaaatgtaattt-----------atatgtaag 32834329  T
Q  299 aaacataattaatttcaaagacaattgtta 328  Q
    |||||||||||||||| |||||||||||||    
T  32834330 aaacataattaatttc-aagacaattgtta 32834358  T

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