View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_84 (Length: 376)
Name: NF10855A_low_84
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_84 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 4 - 364
Target Start/End: Original strand, 1496356 - 1496723
Alignment:
| Q |
4 |
ggttttagatggcttatttgaggttg-------gaactaaaagtttaggaattcactagggagacaacacacgaactcttaacatcgattagagacaact |
96 |
Q |
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| T |
1496356 |
ggttttagatggcttatttgaggttggaagttggaactaaaagtttaggaattcactagggagacaacacacgaactcttaacatcgattagagacaact |
1496455 |
T |
|
| Q |
97 |
cttttggcacatttaaagtctcatattatttcagaatcaaggcaaaaggatggtctattgtctatatacaatatccacactcaacccaacgaaatatcca |
196 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1496456 |
cttttggcacatttaaagtctcatattatttgagaatcaaggcaaaaggatggtctattgtctatatacaatatccacactcaacccaacgaaatatcca |
1496555 |
T |
|
| Q |
197 |
tcaaagtccaatatattgaaagctttccataaatgtcaaaattgttttagtcaaacaacgtcgatgttaagctaccgtccaattaatatcaaccatgtcc |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1496556 |
tcaaagtccaatatattgaaagctttccataaatgtcaaaagtgttttagtcaaacaacgtcgatgttaagctaccgtccaattaatatcaaccatgtcc |
1496655 |
T |
|
| Q |
297 |
ctttccacgatcgagttcaaattgcactactataaaaacacatacaaactactacgtaccaccatatt |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1496656 |
ctttccacgatcgagttcaaattgcactactataaatacacatacaaactactacgtaccaccatatt |
1496723 |
T |
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