View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_86 (Length: 375)
Name: NF10855A_low_86
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_86 |
 |  |
|
| [»] scaffold0491 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 95 - 355
Target Start/End: Complemental strand, 1543131 - 1542871
Alignment:
| Q |
95 |
aatttctttggttcaaaaatgtggatgctcttttttcttatttgggatttgatcgtgggaattgaatctgctgctactgtgacgtctcaacttcaaatgg |
194 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| || ||| | |||||| || |||| | ||||| || | |||||||| |||||||||||||||| |
|
|
| T |
1543131 |
aatttctttggttcaaacatgtggatgctcttttttcctacttgcggtttgattgtcggaactcaatctactcccactgtgacatctcaacttcaaatgg |
1543032 |
T |
 |
| Q |
195 |
aagaaaatgctatattgaatagtggatggtggaatgtgtatgatgcacgcttcattattcgtgatcgttgtaattggcaagccataacttgcaacgaggc |
294 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1543031 |
aagcaaatgctatattgaatagtggatggtggaatgtgtatgatgcacgcttcattattcgtgatcgttgtaattggaaagccataacttgcaacgaggc |
1542932 |
T |
 |
| Q |
295 |
tggaagcataatagcaattgacgtatacaatgatgattacgaagaagttgcgtgggggaat |
355 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1542931 |
tggaagcataatagcaattgacatatccaatgatgattacgaagaagttgcgtgggggaat |
1542871 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 95 - 355
Target Start/End: Original strand, 1104294 - 1104557
Alignment:
| Q |
95 |
aatttctttggttcaaaaatgtggatgctcttttttcttatttgggatttgatcgtgggaattgaatctgctgctactgtgacgtctca---acttcaaa |
191 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||| | |||||| || |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
1104294 |
aatttctttggttcaaacatgtggatgctcttttttcctatttgcggtttgattgttggaattgaatctgctgctactgtgacatctcatcaacttcaaa |
1104393 |
T |
 |
| Q |
192 |
tggaagaaaatgctatattgaatagtggatggtggaatgtgtatgatgcacgcttcattattcgtgatcgttgtaattggcaagccataacttgcaacga |
291 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1104394 |
tggaagcaaatgctatattgaatagtggatggtggaatgtgtctgatgcacgcttcattattcgtgatcgttgtaattggcaagccataacttgcaacgt |
1104493 |
T |
 |
| Q |
292 |
ggctggaagcataatagcaattgacgtatacaatgatgattacgaagaagttgcgtgggggaat |
355 |
Q |
| |
|
|||||||||||||| || ||||| | |||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
1104494 |
ggctggaagcataaaagaaattgtcatatacaatgatgattatgaaaaagttgcgtgggggaat |
1104557 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 1602733 - 1602947
Alignment:
| Q |
11 |
agaatatcattataaaggttttcgatgggtcattcattagatctcaagaaaaagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaa |
110 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1602733 |
agaatatcattataaaggttttcaatgg-tcattcattagatctcaagaaaaagagtatgaacttgatcaaatatttagtttcaaatttctttggttcaa |
1602831 |
T |
 |
| Q |
111 |
aaatgtggatgctcttttttcttatttgggatttgatcgtgggaattgaatctgctgctactgtgacgtc---tcaacttcaaatggaagaaaatgctat |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
1602832 |
aaatatggatgctcttttttcttatttgggatttgattgtgggaattcaatctgctgctactgtgacatctcatcaacttcaaatggaagcaaatgctat |
1602931 |
T |
 |
| Q |
208 |
attgaatagtggatgg |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1602932 |
attgaatagtggatgg |
1602947 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 80 - 305
Target Start/End: Complemental strand, 1559207 - 1558982
Alignment:
| Q |
80 |
aaatatttaatttcaaatttctttggttcaaaaatgtggatgctcttttttcttatttgggatttgatcgtgggaattgaatctgctgctactgtgacgt |
179 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||| ||| |||| || ||||||| |||||| ||||||| | |||| ||||| |||||||| | |
|
|
| T |
1559207 |
aaatatataatttcaaatttccttggtccaaaaatgttgattgcctttcttattatttgcagtttgattgtgggaactcaatccgctgccactgtgacat |
1559108 |
T |
 |
| Q |
180 |
ctcaacttcaaatggaagaaaatgctatattgaatagtggatggtggaatgtgtatgatgcacgcttcattattcgtgatcgttgtaattggcaagccat |
279 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||| |||| ||| |||||||||||||||||| | || |
|
|
| T |
1559107 |
ctcaacttcaaatggaagcaaatgctatatcgaatagtggatggtggaacacctctgatgcacgattcaatatctctgatcgttgtaattggcatgatat |
1559008 |
T |
 |
| Q |
280 |
aacttgcaacgaggctggaagcataa |
305 |
Q |
| |
|
| ||||||||| | ||||||||||| |
|
|
| T |
1559007 |
atgttgcaacgatgatggaagcataa |
1558982 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 305
Target Start/End: Original strand, 1087023 - 1087290
Alignment:
| Q |
38 |
ggtcattcattagatctcaagaaaaagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggatgctcttttttcttattt |
137 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||||| | ||||||||| ||||||||||||||| | ||||||||||||| |||| || |||||| |
|
|
| T |
1087023 |
ggtcattcattagatctaaagcaaaaatttatgaactacacaaaatatttagtttcaaatttctttgatccaaaaatgtggattgcctttcttattattt |
1087122 |
T |
 |
| Q |
138 |
gggatttgatcgtgggaattgaatctgctgctactgtgacgtctcaacttcaaatggaagaaaatgctatattgaatagtggatggtggaatgtgtatga |
237 |
Q |
| |
|
| |||||| ||||||| | |||||||||| ||| |||| ||||||||||||||||||| |||||||||| | || |||||||||||||| | ||| |
|
|
| T |
1087123 |
gcagtttgattgtgggaactcaatctgctgccactatgacatctcaacttcaaatggaagcaaatgctataataaagagtggatggtggaacacttctga |
1087222 |
T |
 |
| Q |
238 |
tgcacgcttcattattcgtgatcgttgtaattggcaagccataacttgcaacgaggctggaagcataa |
305 |
Q |
| |
|
|||||| |||| ||| |||||||||||||||||| | ||| |||||||| | ||||||||||| |
|
|
| T |
1087223 |
tgcacgtttcaatatatctgatcgttgtaattggcatgatatattttgcaacggtgttggaagcataa |
1087290 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 95 - 312
Target Start/End: Complemental strand, 1552440 - 1552223
Alignment:
| Q |
95 |
aatttctttggttcaaaaatgtggatgctcttttttcttatttgggatttgatcgtgggaattgaatctgctgctactgtgacgtctcaacttcaaatgg |
194 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| || |||||| | |||||| | |||| | | ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
1552440 |
aatttctttggtccaaaaatgtggattgcctttcttactatttgcggtttgattatcggaactcagtcttctgctactgtgacatctcaacttcaaatgg |
1552341 |
T |
 |
| Q |
195 |
aagaaaatgctatattgaatagtggatggtggaatgtgtatgatgcacgcttcattattcgtgatcgttgtaattggcaagccataacttgcaacgaggc |
294 |
Q |
| |
|
||| |||||| ||||| ||||||||||||||||| || ||| ||| |||||| || ||||||||||| |||| | | ||| ||||||||| || |
|
|
| T |
1552340 |
aagcaaatgcaatattaaatagtggatggtggaacacgtctgaagcatgcttcaacatctctgatcgttgtacttgggatgatatattttgcaacgacgc |
1552241 |
T |
 |
| Q |
295 |
tggaagcataatagcaat |
312 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
1552240 |
tggaagcataaaagcaat |
1552223 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 1594525 - 1594599
Alignment:
| Q |
41 |
cattcattagatctcaagaaaaagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatg |
115 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
1594525 |
cattcattagatctcaagaaaaaaaatatgaacttgagaaaatatttaatttcaaattcctttggtccaaaaatg |
1594599 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 2319586 - 2319744
Alignment:
| Q |
68 |
atgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggatgctcttttttcttatttgggatttgatcgtgggaattgaatctgctg |
167 |
Q |
| |
|
||||||||||| ||||| ||| |||| ||||||| |||| |||||||||||| ||||| ||||||||||| ||| || ||||| | | ||||||| |
|
|
| T |
2319586 |
atgaacttgataaaatacttagtttccaatttctatggtcagaaaatgtggatggtctttcttcttatttggcctttcattgtgggtactcaatctgc-- |
2319683 |
T |
 |
| Q |
168 |
ctactgtgacgtctcaacttcaaatggaagaaaatgctatattgaatagtggatggtggaat |
229 |
Q |
| |
|
|| | ||||| ||||||| ||| ||||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
2319684 |
ct-cagtgacatctcaacctcatatggaagcaaatgcgatattaaatagtggatggtggaat |
2319744 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 2336057 - 2336106
Alignment:
| Q |
179 |
tctcaacttcaaatggaagaaaatgctatattgaatagtggatggtggaa |
228 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
2336057 |
tctcaacttcaaatggaagcaaatgctataatgaatagtggatggtggaa |
2336106 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 1100123 - 1100167
Alignment:
| Q |
18 |
cattataaaggttttcgatgggtcattcattagatctcaagaaaaa |
63 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
1100123 |
cattataaaggtttttgatgg-tcattcattagatctcaagaaaaa |
1100167 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 3957021 - 3956966
Alignment:
| Q |
173 |
gtgacgtctcaacttcaaatggaagaaaatgctatattgaatagtggatggtggaa |
228 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| ||| | ||||||| ||||||||| |
|
|
| T |
3957021 |
gtgacatctcaacttcaaatggaagcaaatgcaatactaaatagtgaatggtggaa |
3956966 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 3851686 - 3851742
Alignment:
| Q |
173 |
gtgacgtctcaacttcaaatggaagaaaatgctatattgaatagtggatggtggaat |
229 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| || | |||||||||| ||||||| |
|
|
| T |
3851686 |
gtgacatctcaacttcaaatggaagcaaatgcagtagtcaatagtggattgtggaat |
3851742 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 40 - 312
Target Start/End: Complemental strand, 7954 - 7682
Alignment:
| Q |
40 |
tcattcattagatctcaagaaaaag---agtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggatgctcttttttcttatt |
136 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
7954 |
tcattcattagatctcaaaaaaaaatatattatgagcttgaaaaaatatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatt |
7855 |
T |
 |
| Q |
137 |
tgggatttgatcgtgggaattgaatctgctgctactgtgacgtctcaacttcaaatggaagaaaatgctatattgaatagtggatggtggaatgtgtatg |
236 |
Q |
| |
|
|| | |||| | | ||||| | ||| |||| || |||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| | || |
|
|
| T |
7854 |
tgcggtttggttgagggaactcaat---ctgccacaatgacatctcaacttcaaatggaagcaaatgctatattaaatagtggatggtggaacacttctg |
7758 |
T |
 |
| Q |
237 |
atgcacgcttcattattcgtgatcgttgtaattggcaagccataacttgcaacgaggctggaagcataatagcaat |
312 |
Q |
| |
|
||||| ||||| ||| | |||||||||||||||| | ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
7757 |
atgcaaacttcaatatctctaatcgttgtaattggcatggtatatcttgcaacgatgctggaagcataatagcaat |
7682 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 3343 - 3051
Alignment:
| Q |
22 |
ataaaggttttcgatgggtcattcattagatctca-agaaaaagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggat |
120 |
Q |
| |
|
||||||||||| ||||| |||||||| | |||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
3343 |
ataaaggtttttgatgg-tcattcatcacatctcatagaaaaaa--tatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggat |
3247 |
T |
 |
| Q |
121 |
gctcttttttctt---atttgggatttgatcgtgggaattgaatctgctgctactgtgacgtc---tcaacttcaaatggaagaaaatgctatattgaat |
214 |
Q |
| |
|
| ||||| ||||| ||||| | |||| | | ||||| | ||| |||| || |||| || ||||||||||||||||| |||||||||||| ||| |
|
|
| T |
3246 |
ggtctttcttcttataatttgtggtttggttgagggaactcaat---ctgccacaatgacatctcatcaacttcaaatggaagcaaatgctatattaaat |
3150 |
T |
 |
| Q |
215 |
agtggatggtggaatgtgtatgatgcacgcttcattattcgtgatcgttgtaattggcaagccataacttgcaacgaggctggaagcataatagcaatt |
313 |
Q |
| |
|
|||||||||||||| | ||||||| ||||| ||| |||||||||| || |||| | ||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
3149 |
agtggatggtggaacacttctgatgcaaacttcaatatctctgatcgttgtcatgggcatggtatattttgcaacgatgctggaagcataatagcaatt |
3051 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 18751594 - 18751305
Alignment:
| Q |
22 |
ataaaggttttcgatgggtcattcattagatctca-agaaaaagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggat |
120 |
Q |
| |
|
||||||||||| ||||| |||||||| | |||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
18751594 |
ataaaggtttttgatgg-tcattcatcacatctcatagaaaaaa--tatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggat |
18751498 |
T |
 |
| Q |
121 |
gctcttttttcttatttgggatttgatcgtgggaattgaatctgctgctactgtgacgtc---tcaacttcaaatggaagaaaatgctatattgaatagt |
217 |
Q |
| |
|
| ||||| |||||||||| | |||| | | ||||| | ||| |||| || |||| || ||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
18751497 |
ggtctttcttcttatttgcggtttggttgagggaactcaat---ctgccacaatgacatctcatcaacttcaaatggaagcaaatgctatattaaatagt |
18751401 |
T |
 |
| Q |
218 |
ggatggtggaatgtgtatgatgcacgcttcattattcgtgatcgttgtaattggcaagccataacttgcaacgaggctggaagcataatagcaatt |
313 |
Q |
| |
|
||||||||||| | | ||||| ||||| ||| |||||||||| || |||| | ||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
18751400 |
ggatggtggaacacttcttatgcagacttcaatatctctgatcgttgtcatgggcatggtatattttgcaacgatgctggaagcataatagcaatt |
18751305 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 18741537 - 18741245
Alignment:
| Q |
22 |
ataaaggttttcgatgggtcattcattagatctca-agaaaaagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggat |
120 |
Q |
| |
|
||||||||||| ||||| |||||||| | |||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
18741537 |
ataaaggtttttgatgg-tcattcatcacatctcatagaaaaaa--tatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggat |
18741441 |
T |
 |
| Q |
121 |
gctcttttttctt---atttgggatttgatcgtgggaattgaatctgctgctactgtgacgtc---tcaacttcaaatggaagaaaatgctatattgaat |
214 |
Q |
| |
|
| ||||| ||||| ||||| | |||| | | ||||| | ||| |||| || |||| || ||||||||||||||||| |||||||||||| ||| |
|
|
| T |
18741440 |
ggtctttcttcttataatttgtggtttggttgagggaactcaat---ctgccacaatgacatctcatcaacttcaaatggaagcaaatgctatattaaat |
18741344 |
T |
 |
| Q |
215 |
agtggatggtggaatgtgtatgatgcacgcttcattattcgtgatcgttgtaattggcaagccataacttgcaacgaggctggaagcataatagcaatt |
313 |
Q |
| |
|
|||||||||||||| | ||||||| ||||| ||| |||||||||| || |||| | ||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
18741343 |
agtggatggtggaacacttctgatgcaaacttcaatatctctgatcgttgtcatgggcatggtatattttgcaacgatgctggaagcataatagcaatt |
18741245 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 18746501 - 18746209
Alignment:
| Q |
22 |
ataaaggttttcgatgggtcattcattagatctca-agaaaaagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtggat |
120 |
Q |
| |
|
||||||||||| ||||| |||||||| | |||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
18746501 |
ataaaggtttttgatgg-tcattcatcacatctcatagaaaaaa--tatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggat |
18746405 |
T |
 |
| Q |
121 |
gctcttttttctt---atttgggatttgatcgtgggaattgaatctgctgctactgtgacgtc---tcaacttcaaatggaagaaaatgctatattgaat |
214 |
Q |
| |
|
| ||||| ||||| ||||| | |||| | | ||||| | ||| |||| || |||| || ||||||||||||||||| |||||||||||| ||| |
|
|
| T |
18746404 |
ggtctttcttcttataatttgtggtttggttgagggaactcaat---ctgccacaatgacatctcatcaacttcaaatggaagcaaatgctatattaaat |
18746308 |
T |
 |
| Q |
215 |
agtggatggtggaatgtgtatgatgcacgcttcattattcgtgatcgttgtaattggcaagccataacttgcaacgaggctggaagcataatagcaatt |
313 |
Q |
| |
|
|||||||||||||| | ||||||| ||||| ||| |||||||||| || |||| | ||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
18746307 |
agtggatggtggaacacttctgatgcaaacttcaatatctctgatcgttgtcatgggcatggtatattttgcaacgatgctggaagcataatagcaatt |
18746209 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 18755694 - 18755503
Alignment:
| Q |
39 |
gtcattcattagatctcaagaaa-aagagtatgaacttgatcaaatatttaatttcaaatttctttggttcaaaaatgtgg-atgctcttttttcttatt |
136 |
Q |
| |
|
||||||||||||||||| ||||| || | | |||||||| ||||||||| ||||||||||| ||||| |||| |||||| |||| |||| |||||||| |
|
|
| T |
18755694 |
gtcattcattagatctcgagaaagaaaaaaaagaacttgacaaaatatttagtttcaaatttcattggtccaaatatgtggaatgc-ctttcttcttatt |
18755596 |
T |
 |
| Q |
137 |
tgggatttgatcgtgggaattgaatctgctgctactgtgacgtctcaacttcaaatggaagaaaatg-ctatattgaatagtggatggtggaa |
228 |
Q |
| |
|
|||| | |||||| ||||| | ||||| |||||| |||| | |||| |||||||||||| ||||| ||||||| || ||||||||||||| |
|
|
| T |
18755595 |
tggggtgtgatcgagggaactcaatcttttgctacaatgacatatcaatttcaaatggaagcaaatgcctatattaaaccgtggatggtggaa |
18755503 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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