View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_89 (Length: 369)

Name: NF10855A_low_89
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_89
NF10855A_low_89
[»] chr2 (5 HSPs)
chr2 (171-357)||(16551778-16551962)
chr2 (7-59)||(16551614-16551666)
chr2 (172-238)||(29430823-29430889)
chr2 (186-238)||(5902502-5902554)
chr2 (187-235)||(16552510-16552558)
[»] chr8 (3 HSPs)
chr8 (174-238)||(39881662-39881726)
chr8 (172-238)||(4560567-4560633)
chr8 (186-238)||(14949931-14949983)
[»] chr6 (4 HSPs)
chr6 (172-238)||(2455875-2455941)
chr6 (176-238)||(769203-769265)
chr6 (180-237)||(32171330-32171387)
chr6 (175-219)||(4331014-4331058)
[»] chr3 (2 HSPs)
chr3 (175-273)||(43115086-43115184)
chr3 (273-307)||(34318022-34318056)
[»] chr4 (5 HSPs)
chr4 (172-235)||(18628492-18628555)
chr4 (188-273)||(1137742-1137827)
chr4 (174-273)||(28232575-28232674)
chr4 (324-352)||(23525731-23525759)
chr4 (186-222)||(29778884-29778920)
[»] chr5 (5 HSPs)
chr5 (172-238)||(11457163-11457229)
chr5 (175-238)||(7856605-7856667)
chr5 (172-238)||(38728467-38728533)
chr5 (192-249)||(2568712-2568769)
chr5 (189-238)||(3977373-3977422)
[»] chr1 (6 HSPs)
chr1 (175-237)||(14559038-14559100)
chr1 (188-251)||(17269302-17269365)
chr1 (172-238)||(4757403-4757469)
chr1 (323-356)||(29665912-29665945)
chr1 (172-208)||(35017677-35017713)
chr1 (172-208)||(48748534-48748570)
[»] chr7 (1 HSPs)
chr7 (172-237)||(34754749-34754814)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 171 - 357
Target Start/End: Original strand, 16551778 - 16551962
Alignment:
Q  171 aagcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacatgagttgtatccagattatttccagaa 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||| ||||||||| ||    
T  16551778 aagcttatctattgacataaacacttgcgagattgtttagaagagcttatggaaagatcttatgacatatacataagttgtattcagcttatttccataa 16551877  T
Q  271 gctattttgttatagaaataccttatacttgagcacttaatcgataaccatttttaattaagatgtttatccaaacaaggccatatt 357  Q
    |||||||||||||||||| |||||||| |||||||||||  |||||||||  |||||||||||||||||||||||||||||||||||    
T  16551878 gctattttgttatagaaacaccttataattgagcacttatacgataacca--tttaattaagatgtttatccaaacaaggccatatt 16551962  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 16551614 - 16551666
Alignment:
Q  7 agttgatggtgctgaatgttctggttttattgcatttagttgtgatctattga 59  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  16551614 agttgatggtgctgaatgttctggttttattgcatttagttctgatttattga 16551666  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 29430889 - 29430823
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    |||||||||| ||||||||||||||| | || | ||| ||||| |||||||||| | ||||||||||    
T  29430889 agcttatctactgacataaacacttgtgggactatttggaagaacttatgaaaatagcttatgacat 29430823  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 5902502 - 5902554
Alignment:
Q  186 cataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    |||||||||||| |||| ||||| ||||| |||||||||| | ||||||||||    
T  5902502 cataaacacttgtgagactgtttggaagaacttatgaaaacagcttatgacat 5902554  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 16552510 - 16552558
Alignment:
Q  187 ataaacacttgcgagattgtttagaagagcttatgaaaagatcttatga 235  Q
    ||||||||||| ||||||||||   ||| ||||||||||||||||||||    
T  16552510 ataaacacttgtgagattgtttgttagatcttatgaaaagatcttatga 16552558  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 39881662 - 39881726
Alignment:
Q  174 cttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||| |||||| | ||||||||||    
T  39881662 cttatctattggcataaacacttgtgagattgtttggaagagcttgtgaaaatagcttatgacat 39881726  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 4560633 - 4560567
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    ||||||||||||||||||| |||||| ||| |||||| ||||| |||||| ||| | ||||| ||||    
T  4560633 agcttatctattgacataagcacttgtgaggttgtttggaagaacttatggaaataacttataacat 4560567  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 14949983 - 14949931
Alignment:
Q  186 cataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    |||||||| ||| |||| ||||||| |||||||||||||| | ||||||||||    
T  14949983 cataaacatttgtgagactgtttaggagagcttatgaaaataacttatgacat 14949931  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 2455941 - 2455875
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    ||||||||||  | ||||| |||||||||||||||||||||||||||||| ||| | ||||||||||    
T  2455941 agcttatctaccggcataagcacttgcgagattgtttagaagagcttatggaaacaacttatgacat 2455875  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 769265 - 769203
Alignment:
Q  176 tatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    |||||||||  ||||||||||| |||| ||||| || || |||||||||| ||||||||||||    
T  769265 tatctattggtataaacacttgtgagactgtttggatgaacttatgaaaacatcttatgacat 769203  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 32171330 - 32171387
Alignment:
Q  180 tattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgaca 237  Q
    ||||||||||| ||||||||||| |||||   |||||||||||||| | |||||||||    
T  32171330 tattgacataagcacttgcgagactgtttgagagagcttatgaaaacagcttatgaca 32171387  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 4331014 - 4331058
Alignment:
Q  175 ttatctattgacataaacacttgcgagattgtttagaagagctta 219  Q
    |||||||||||||||| |||||| ||||||||||| |||| ||||    
T  4331014 ttatctattgacataagcacttgtgagattgtttaaaagaactta 4331058  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 43115184 - 43115086
Alignment:
Q  175 ttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacatgagttgtatccagattatttccagaagct 273  Q
    |||||||||||||||| |||||| |||||||||| |||||| ||||| ||| | |||||||||| | ||| | |||| | ||| ||||||||| |||||    
T  43115184 ttatctattgacataatcacttgtgagattgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagct 43115086  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 307
Target Start/End: Complemental strand, 34318056 - 34318022
Alignment:
Q  273 tattttgttatagaaataccttatacttgagcact 307  Q
    |||||||||||||||||| ||||||||||||||||    
T  34318056 tattttgttatagaaatagcttatacttgagcact 34318022  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 18628492 - 18628555
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatga 235  Q
    |||||||||| ||||||||||||||| |||| ||||| | |||||||||||||| | |||||||    
T  18628492 agcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 273
Target Start/End: Complemental strand, 1137827 - 1137742
Alignment:
Q  188 taaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacatgagttgtatccagattatttccagaagct 273  Q
    |||||||||| || | ||||||| ||| |||||||||| |||||||||||| | ||| |||||| | ||| ||||||||| |||||    
T  1137827 taaacacttgtgacactgtttaggagaacttatgaaaacatcttatgacatgttcataagttgttttcagtttatttccataagct 1137742  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 273
Target Start/End: Complemental strand, 28232674 - 28232575
Alignment:
Q  174 cttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacatgagttgtatccagattatttccagaagct 273  Q
    ||||||||||||||| | ||||||||||| ||||| ||||||||| || ||| | |||||||| |||  || |||||| | ||  ||||||||| |||||    
T  28232674 cttatctattgacatgagcacttgcgagactgtttggaagagcttgtggaaacaacttatgacttatttataagttgttttcatcttatttccacaagct 28232575  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 352
Target Start/End: Original strand, 23525731 - 23525759
Alignment:
Q  324 ttaattaagatgtttatccaaacaaggcc 352  Q
    |||||||||||||||||||||||||||||    
T  23525731 ttaattaagatgtttatccaaacaaggcc 23525759  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 29778920 - 29778884
Alignment:
Q  186 cataaacacttgcgagattgtttagaagagcttatga 222  Q
    |||||||||||| |||||||||||||| |||||||||    
T  29778920 cataaacacttgtgagattgtttagaaaagcttatga 29778884  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 11457229 - 11457163
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    ||||||||||||| || ||||||||| |||| ||||| |||||||||||| ||| | ||||||||||    
T  11457229 agcttatctattggcagaaacacttgtgagactgttttgaagagcttatggaaacaacttatgacat 11457163  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 7856667 - 7856605
Alignment:
Q  175 ttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    |||| |||||||| ||||||||||||||||||||| |||| ||||| |||| | ||||||||||    
T  7856667 ttatttattgacaaaaacacttgcgagattgttta-aagaacttataaaaacaacttatgacat 7856605  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 38728533 - 38728467
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    |||||||||||||  |||||||| || | |||||||| | |||||||||||||| | ||||||||||    
T  38728533 agcttatctattggtataaacacctgtgtgattgtttgggagagcttatgaaaatagcttatgacat 38728467  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 2568769 - 2568712
Alignment:
Q  192 cacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacatgagtt 249  Q
    |||||| |||| ||||||||||| |||||||||| | |||||||||||| ||| ||||    
T  2568769 cacttgagagactgtttagaagaacttatgaaaacagcttatgacatattcataagtt 2568712  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 3977422 - 3977373
Alignment:
Q  189 aaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    ||||||||| |||||||||||||| | |||||||||| | ||||||||||    
T  3977422 aaacacttgtgagattgtttagaaaaacttatgaaaacagcttatgacat 3977373  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 14559100 - 14559038
Alignment:
Q  175 ttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgaca 237  Q
    ||||||| ||||||||||| |||||||||||||||| |||||| ||  ||||| |||||||||    
T  14559100 ttatctactgacataaacatttgcgagattgtttaggagagctaatagaaagagcttatgaca 14559038  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 17269365 - 17269302
Alignment:
Q  188 taaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacatatacatgagttgt 251  Q
    |||||||||| |||||||||| | || ||||||||||| | |||||||||| | ||||||||||    
T  17269365 taaacacttgtgagattgtttggtagtgcttatgaaaataccttatgacatgttcatgagttgt 17269302  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 4757469 - 4757403
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgacat 238  Q
    |||||||||||||||||||||||||| ||||   ||| | ||| |||||||||| | ||||||||||    
T  4757469 agcttatctattgacataaacacttgtgagaccatttggcagaacttatgaaaacaacttatgacat 4757403  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 29665912 - 29665945
Alignment:
Q  323 tttaattaagatgtttatccaaacaaggccatat 356  Q
    |||||||||| |||||||||||||||||||||||    
T  29665912 tttaattaagctgtttatccaaacaaggccatat 29665945  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 35017713 - 35017677
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgttt 208  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  35017713 agcttatctattggcataaacacttgtgagattgttt 35017677  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 48748534 - 48748570
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgttt 208  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  48748534 agcttatccattgacataaacacttgtgagattgttt 48748570  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 34754749 - 34754814
Alignment:
Q  172 agcttatctattgacataaacacttgcgagattgtttagaagagcttatgaaaagatcttatgaca 237  Q
    |||||||||||||||| ||||||||  |||| |||||   |||||||| ||||| |||||||||||    
T  34754749 agcttatctattgacacaaacacttatgagactgtttgagagagcttaagaaaacatcttatgaca 34754814  T

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