View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_9 (Length: 537)
Name: NF10855A_low_9
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 37169401 - 37169057
Alignment:
| Q |
1 |
tcaaataattatagggnnnnnnngaaaggataggatgaagcgtgaggtgcaggattatggaggatgaccatacattgaaattatttaacacatggactta |
100 |
Q |
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| T |
37169401 |
tcaaataattatagggaaaaaatgaaaggataggatgaagcgtgaggtgcaggattatggaggatgacaatacattgaaattatttaacacatggactta |
37169302 |
T |
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| Q |
101 |
tgtttgcaaagaaaagctcaataactccacaggttcgagtattatgtagcatcttcttccactgtttgcttcccaggcgtgatcaactatgtctattcgt |
200 |
Q |
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| T |
37169301 |
tgtttgcaaagaaaagctcaataactccacaggttcgagtattatgtagcatcttcttccactgtttgcttcccaggcgtgatcaactatgtctattcgt |
37169202 |
T |
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| Q |
201 |
gcatggccgcacaagtggcacgttttgacaggaccactgtagatacaatgacataacagaaattggtttgagaccagaatgggtgttggaaatagaaagt |
300 |
Q |
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| T |
37169201 |
gcatggccgcacaagtggcacgttttgacaggatcactgtagatacaatgacataacagaaattggtttgagatcagaatgggtgttggaaatggaaagt |
37169102 |
T |
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| Q |
301 |
tggattatggatgagggaggtttctggtggtgcgggtgatgaatg |
345 |
Q |
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| T |
37169101 |
tggattatggatgagggaggtttctggtggtgcgggtgatgaatg |
37169057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 345 - 533
Target Start/End: Complemental strand, 37168985 - 37168796
Alignment:
| Q |
345 |
gttaagatcatttaactatattaaacttgatgtgtaatttggaccgtcttttctacaacaacaaatcaaaatcctatatgtgtatattgttt-gacaaca |
443 |
Q |
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| T |
37168985 |
gttaagatcatttaactatattaaacttgatgtgtaatttggaccgtcttttctacaacaacaaatcaaaatcctatatgtgtatattgttttgacaaca |
37168886 |
T |
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| Q |
444 |
agattttcataagcgttgaggattagattaagttaatgaccaatcatgagagtgggcgttcaagacatccaattgggtatggctcacatg |
533 |
Q |
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| T |
37168885 |
agattttcataagcgttgaggattagattaagttaatgaccaatcatgagagtgggcgttcaagacatccaattgggtatggctcacatg |
37168796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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