View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_91 (Length: 368)
Name: NF10855A_low_91
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_91 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 11060485 - 11060133
Alignment:
| Q |
16 |
atcaatagccttctcatacttctgcgaaagctcatttatagaagttttgcatgctgaaatttttgaatgaaaattaccaggcgtcaaaagaatgcaatat |
115 |
Q |
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| T |
11060485 |
atcaatagccttctcatacttctgcgaaagctcatttatagaagttttgcatgctgaaatttttgaatgaaaattaccaggcgtcaaaagaatgcaatat |
11060386 |
T |
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| Q |
116 |
ttatgtgcatgtatgctgaaattcacatgagatatgacatctcaatacaagtatgaagtatgttgaacaatgagcaggtaatttaccacatcaaccaagc |
215 |
Q |
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| T |
11060385 |
ttatgtgcatgtatgctgaaattcacatgagatatgacatctcaatacaagtatgaagtatgttgaacaatgagcaggtaatttaccacatcaaccaagc |
11060286 |
T |
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| Q |
216 |
aaaacaacattctagttttcatcctctaaagaaggtaaatctggcataatgatcaatgcttatcagtaaaaaccttgtaatacaaatatcaaaagaatgc |
315 |
Q |
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| T |
11060285 |
aaaacaacattctagttttcatcctctaaagaaggtaaatctggcataatgatcaatgcttatcagtaaaaaccttgtaatacaaatatcaaaagaatgc |
11060186 |
T |
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| Q |
316 |
tacttgactgacttttaaactacgtagcaccaacaatatagattgacggtgtg |
368 |
Q |
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| T |
11060185 |
tacttgactgacttttaaactacgtagcaccaacaatatagattgacggtgtg |
11060133 |
T |
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