View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_99 (Length: 361)
Name: NF10855A_low_99
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_99 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 5 - 195
Target Start/End: Complemental strand, 12974434 - 12974243
Alignment:
| Q |
5 |
tcatgtgcacaatatcttc-gtcaattaaaggtaccatgacatgcatgataatgcaactaatagaaaaaccgataaaaagattaacttgcataaaaattt |
103 |
Q |
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| T |
12974434 |
tcatgtgcacaatatcttccgtcaattaaaggtgccatgacatgcatgataatgcaactaatagaaaaaccgataaaaagattaacttgcataaaaattt |
12974335 |
T |
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| Q |
104 |
gatgaaatgaggatcaatgtaacaacaacnnnnnnntcagaaggatcgatatgattatggttattttaaattctaagtgttattaaagagga |
195 |
Q |
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| T |
12974334 |
gatgaaatgaggatcaatgtaacaacaacaaaaaaatcagaaggatcgatatgattatggttattttaaattctaagtgttattaaagagga |
12974243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 241 - 355
Target Start/End: Complemental strand, 13148247 - 13148141
Alignment:
| Q |
241 |
aatcttgctaaaaaattgatgagccatatgattcttatatctccaagacttttccacacttcaagataggtatattgtttgaccccatttccttgccatt |
340 |
Q |
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| T |
13148247 |
aatcttgctaaaaaattggtgagccacatgattcttatatctccaagacttttccacacttca--------atattgtttgaccccatttccttgccatt |
13148156 |
T |
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| Q |
341 |
tcaatgggcatttat |
355 |
Q |
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| T |
13148155 |
tcaatgggcatttat |
13148141 |
T |
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