View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855_high_4 (Length: 238)
Name: NF10855_high_4
Description: NF10855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31106988 - 31106766
Alignment:
| Q |
1 |
caaagtaattggttccaaacggttacactaatatgaagtatagatatagactaatattattttataggtaaactttggtgtatgattttaagtattcatc |
100 |
Q |
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| T |
31106988 |
caaagtaataggttccaaacggttacactaatatgaagtatagatatagactaatattattttataggtaaactttggtgtatgattttaagtattcatc |
31106889 |
T |
|
| Q |
101 |
gatgtgggactcaagaagagtgctacaaggtggttataacttctttctcctactcgctcgnnnnnnnctccaagatatttattcttcattctcaattcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31106888 |
gatgtgggactcaagaagagtgctacaaggtggttataacttctttctcctactcgctcgtttttttctccaagatatttattcttcattctcaattcag |
31106789 |
T |
|
| Q |
201 |
ttatcttttcttagtattattat |
223 |
Q |
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|||||||||| |||||||||||| |
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|
| T |
31106788 |
ttatcttttcctagtattattat |
31106766 |
T |
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