View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855_low_1 (Length: 454)
Name: NF10855_low_1
Description: NF10855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 42 - 437
Target Start/End: Original strand, 108504 - 108899
Alignment:
| Q |
42 |
tggcttgattgtaatcaaataagtatacaagagagacacagtgtacaaattgtcccaaaaattagcctaataaatgagaacaagaagatgtgaggagata |
141 |
Q |
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| T |
108504 |
tggcttgattgtaatcaaataagtatacaagagagacacagtgtacaaattgtcccaaaaattagcctaataaatgagaacaagaagatgtgaggagata |
108603 |
T |
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| Q |
142 |
tatctctttttccatacttgtttttgacgatccatctaatgcaaacgaagatttacatatcccgagtcttttggcaaagtttaagtttgacctaacggtg |
241 |
Q |
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| T |
108604 |
tatctctttttccatacttgtttttgacgatccatctaatgcaaacgaagatttacatatcccgagtcttttggcaaagtttaagtttgacctaacggtg |
108703 |
T |
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| Q |
242 |
gacgaattccagtctcagttttatggctatgagttctgacaaaaaagagagttgctttcacnnnnnnnngtcttcttattggttgttctcctcgccaaaa |
341 |
Q |
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| T |
108704 |
gacgaattccagtctcagttttatggctatgagttctgacaaaaaagagagttgctttcacttttttttgtcttcttattggttgttctcctcgccaaaa |
108803 |
T |
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| Q |
342 |
tactctcttcttataagcaaactatggtctctcttcactaatataagtgagacgtataaagaactaaaatattagggtgttctatgatatgggcct |
437 |
Q |
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| T |
108804 |
tactctcttcttataagcaaactatggtctctcttcactaatataagtaagacgtataaagaactaaaatattagggtgttctatgatatgggcct |
108899 |
T |
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