View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855_low_2 (Length: 354)
Name: NF10855_low_2
Description: NF10855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 149 - 336
Target Start/End: Complemental strand, 32907519 - 32907330
Alignment:
| Q |
149 |
gacagaaaatacaaaagagaggagtgaatagggaagccaacaattctgctgatttgctaaccaagagaggagtgacaattaatgggaggattattgagtg |
248 |
Q |
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| T |
32907519 |
gacagaaaatacaaaagagaggagtgaacagggaagccaacaattctgctgatttgctaaccaagagaggagtgacaattagtgggaggattattgagtg |
32907420 |
T |
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| Q |
249 |
gttcacacataatatagg--ataaagtgagagtattttgtcaggattttcattgatttattcattcatatctgttttggctctttctgtg |
336 |
Q |
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| T |
32907419 |
gttcatacataatataggatataaagtgagagtattttgtcaggattttcattgatttattcattcatatctgttttggctctttctgtg |
32907330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 32907697 - 32907580
Alignment:
| Q |
20 |
agatttcaatagtgtaaagccagtagtatttcattacagttacctggaagcaaatccatccaatggcagaataccctccatataaggtttaatatattaa |
119 |
Q |
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| T |
32907697 |
agatttcgatagtataaagccagtagtatttcattacaattacctggaagcaaatccatccaatggaagaataccctccatataaagtttaatacattaa |
32907598 |
T |
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| Q |
120 |
gttttaagacatgctaca |
137 |
Q |
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| T |
32907597 |
gttttaagacatgctaca |
32907580 |
T |
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