View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855_low_3 (Length: 340)
Name: NF10855_low_3
Description: NF10855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 54396441 - 54396765
Alignment:
| Q |
1 |
tgagattttcaaaatggtgtagttctgcaaacgtgcacctgatgttgtgggatagctagttgtgtggttgttatatctggcctcagtaccaagaacacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54396441 |
tgagattttcaaaatggtgtagttctgcaaacgtgcacctgatgttgtgggatagctagttgtgtgaatgttatatctggcctcagtaccaagaacacta |
54396540 |
T |
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| Q |
101 |
tgaacaaattcaagcatggactctaatgaagtaggacaagctttggtctccccttttgtgggttcaaattcacattgatcaattatgtctttcatgtctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396541 |
tgaacaaattcaagcatggactctaatgaagtaggacaagctttggtctccccttttgtgggttcaaattcacattgatcaattatgtctttcatgtctt |
54396640 |
T |
|
| Q |
201 |
caccttggggggaatcttttgtgagagagaatatttgaagaaggcttggtagttgtgacttggagaaaggaatgtagtcagctacnnnnnnnggcaagaa |
300 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54396641 |
caccttggggggaatcttttgtgagagagaagagttgaagaaggcttggtagttgtgacttggagaaaggaatgtagtcagctactttttttggcaagaa |
54396740 |
T |
|
| Q |
301 |
gttagcatattctctgataggaaat |
325 |
Q |
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||||||||||||||||| ||||||| |
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| T |
54396741 |
gttagcatattctctgacaggaaat |
54396765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 54381557 - 54381881
Alignment:
| Q |
1 |
tgagattttcaaaatggtgtagttctgcaaacgtgcacctgatgttgtgggatagctagttgtgtggttgttatatctggcctcagtaccaagaacacta |
100 |
Q |
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|||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||| | ||| ||||| || |
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| T |
54381557 |
tgagatttccaaaatggtgtagttttgcaaacgcacacctgatgttgtcggatagctagttgtgtgaatgttatatctggcctcggcaccgagaacgctg |
54381656 |
T |
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| Q |
101 |
tgaacaaattcaagcatggactctaatgaagtaggacaagctttggtctccccttttgtgggttcaaattcacattgatcaattatgtctttcatgtctt |
200 |
Q |
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|||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
54381657 |
tgaacaaattcaagcatggactctaaagaagtgggacaggccttggtctccccttttgtgggttcaaactcacattgatcaattatgtctttcatatctt |
54381756 |
T |
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| Q |
201 |
caccttggggggaatcttttgtgagagagaatatttgaagaaggcttggtagttgtgacttggagaaaggaatgtagtcagctacnnnnnnnggcaagaa |
300 |
Q |
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|||||||||| || ||||||||||| ||||||| |||||||||||| |||||||| |||||||||| |||||||||||||||||| |||||||| |
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| T |
54381757 |
caccttggggagagtcttttgtgagtgagaatagttgaagaaggctaggtagttgcgacttggagagaggaatgtagtcagctacttttcttggcaagaa |
54381856 |
T |
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| Q |
301 |
gttagcatattctctgataggaaat |
325 |
Q |
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| |||||||||||||||||||||| |
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| T |
54381857 |
gcgagcatattctctgataggaaat |
54381881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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