View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855_low_5 (Length: 250)
Name: NF10855_low_5
Description: NF10855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 54396342 - 54396099
Alignment:
| Q |
1 |
caaagttcttctaaagggtcaatatggagacataatggatgctttgggcatttgccacctagacacgtctgacatgaatcctaatcattttatatttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396342 |
caaagttcttctaaagggtcaatatggagacataatggatgctttgggcatttgccacctagacacgtctgacatgaatcctaatcattttatatttcaa |
54396243 |
T |
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| Q |
101 |
ctacttggaataaagcctggggaagctcctatgtgccatttcttccctgtaaagcacgttctatgggcaccactcccaccagaggccacccactgaacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396242 |
ctacttggaataaagcctggggaagctcctatgtgccatttcttccctgtaaagcatgttctatgggcaccactcccaccagaggccacccactgaacca |
54396143 |
T |
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| Q |
201 |
aagggaactagttgatcatatttctatgtcattccctatgcttc |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396142 |
aagggaactagttgatcatatttctatgtcattccctatgcttc |
54396099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 54381458 - 54381246
Alignment:
| Q |
1 |
caaagttcttctaaagggtcaatatggagacataatggatgctttgggcatttgccacctagacacgtctgacatgaatcctaatcattttatatttcaa |
100 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54381458 |
caaagttcttctaaggggtcaatatggagacatgatggatgctttgggcatttgccacctagacacgtctgacatgaatcctaatcattttatatttcaa |
54381359 |
T |
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| Q |
101 |
ctacttggaataaagcctggggaagctcctatgtgccatttcttccctgtaaagcacgttctatgggcaccactcccaccagaggccacccactgaacca |
200 |
Q |
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||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||| ||||||| | |
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| T |
54381358 |
ctacttggaatgaagcctggggaagctccactgtgtcatttcttccctgtaaagcacattgtatgggcgccactcccaccagaggccaccaactgaacaa |
54381259 |
T |
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| Q |
201 |
aagggaactagtt |
213 |
Q |
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|||||||||||| |
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| T |
54381258 |
gagggaactagtt |
54381246 |
T |
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