View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855_low_9 (Length: 235)
Name: NF10855_low_9
Description: NF10855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855_low_9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3115299 - 3115065
Alignment:
| Q |
1 |
actttgttgtaaaagacaatgatgttgttggttcacaggttattggtgcagttggaattccagtagaaaaattatgtgatggtacaaaagttgaaggctt |
100 |
Q |
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| T |
3115299 |
actttgttgtaaaagacaatgatattgttggttcacaggttattggtgcagttggaattccagtagaaaaattatgtgatggtacaaaagttgaaggctt |
3115200 |
T |
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| Q |
101 |
ttttcccattctcaatactaatggaaaaccctttaagactgaaacaattttgagcttgtcaattcagtatacacctgttgataaggtagccctttatagc |
200 |
Q |
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| T |
3115199 |
ttttcccattctcaatactaatggaaaaccctttaagactgaagcaattttgagcttgtcaattcagtatacacctgttgataaggtagccctttatagc |
3115100 |
T |
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| Q |
201 |
aatggtgttggtggtgattttcaaggtgttcctgc |
235 |
Q |
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| T |
3115099 |
aatggtgttggtggtgattttcaaggtgttcctgc |
3115065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3121155 - 3120921
Alignment:
| Q |
1 |
actttgttgtaaaagacaatgatgttgttggttcacaggttattggtgcagttggaattccagtagaaaaattatgtgatggtacaaaagttgaaggctt |
100 |
Q |
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|||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |
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| T |
3121155 |
actttgttgtaaaagacagtgatattgttggttcacagcttattggtgcagttggaattccagttgaaaagttatgtgatggtgcaaaagttgaaggctt |
3121056 |
T |
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| Q |
101 |
ttttcccattctcaatactaatggaaaaccctttaagactgaaacaattttgagcttgtcaattcagtatacacctgttgataaggtagccctttatagc |
200 |
Q |
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| T |
3121055 |
tttccccattcttaatactaatggaaaacccttcaagaccgaaaccgttttgagcttatcaattcagtatactcctattgataagataacgctttatagc |
3120956 |
T |
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| Q |
201 |
aatggtgttggtggtgattttcaaggtgttcctgc |
235 |
Q |
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| T |
3120955 |
aatggtgttggttctgattatcaaggcgttcctgc |
3120921 |
T |
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