View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10856_high_1 (Length: 349)
Name: NF10856_high_1
Description: NF10856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10856_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 1963296 - 1962981
Alignment:
| Q |
18 |
gttattgtgtttcaccagcaattgtggtattactaccaatatgaatgcatagctttgaataatggctttcaacatgttgaatgtgaatcagatttgcaat |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1963296 |
gttattgtgtttcgccagcaattgtggtattactaccaatatgaatgcataactttgaataatggctttca-catgttgaatgtgaatcagatttgcaat |
1963198 |
T |
|
| Q |
118 |
cagcttggactttgattaaggaaggagttccaacaacccacccttatgcacatgttattgacctaattatttggtttattggttatctttggctcttgtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963197 |
cagcttggactttgattaaggaaggagttccaacaatccacccttatacacatgttattggcctcattatttggtttattggttatctttggctcttgtc |
1963098 |
T |
|
| Q |
218 |
tttccatcattccttgagggaagttcatagatgtgcgaatcaactagcgatatacaaagcaatattgaagggtgatgcaattgcttggagttaatgttca |
317 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||||||||||| |||||||| |
|
|
| T |
1963097 |
tttccatcattccttgagggaagttaatagatgtgcgaatcaattagcgatatacaaagcaagattggagggtgacgcaattgcttggagtcaatgttca |
1962998 |
T |
|
| Q |
318 |
actcctttttcgactac |
334 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
1962997 |
acacctttttcgactac |
1962981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 75 - 334
Target Start/End: Complemental strand, 4270040 - 4269781
Alignment:
| Q |
75 |
aataatggctttcaacatgttgaatgtgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacccttatgcacatgtta |
174 |
Q |
| |
|
|||||||| |||| |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| |||||| ||||| |
|
|
| T |
4270040 |
aataatggttttcgacatattgaatgtgaatcagattgccaatcagctttaactttgattaaggaaggagttccgacaactcacccctatgcatttgtta |
4269941 |
T |
|
| Q |
175 |
ttgacctaattatttggtttattggttatctttggctcttgtctttccatcattccttgagggaagttcatagatgtgcgaatcaactagcgatatacaa |
274 |
Q |
| |
|
||||||| |||| | ||||||| ||||| |||||| ||||||||||||||||||| |||||||| | |||| |||| || |||||| ||||| |
|
|
| T |
4269940 |
ttgacctcattaagagatttattgattatccttggcttttgtctttccatcattcctcgagggaaggtaatagtaatgcggattggttagcgaaatacat |
4269841 |
T |
|
| Q |
275 |
agcaatattgaagggtgatgcaattgcttggagttaatgttcaactcctttttcgactac |
334 |
Q |
| |
|
||||| |||| | |||||| | ||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
4269840 |
agcaagattggaaggtgattcgattgcttggaggtaatgtccaactcctctttcgactac |
4269781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 74 - 334
Target Start/End: Complemental strand, 22081721 - 22081460
Alignment:
| Q |
74 |
gaataatggctttcaacatgttgaatgtgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacccttatgcacatgtt |
173 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| ||||| ||| | ||||||| |||| |
|
|
| T |
22081721 |
gaataatagctttcgacatgttgaatgtgaatctgattgtcaatcagctttgactttgattaaggaaggagttccgacaactcactcatatgcacctgtt |
22081622 |
T |
|
| Q |
174 |
attgacctaatt-atttggtttattggttatctttggctcttgtctttccatcattccttgagggaagttcatagatgtgcgaatcaactagcgatatac |
272 |
Q |
| |
|
|||||||| ||| | | |||||| ||||| |||||| ||| ||||||||||||| |||||||||| | ||| ||||| || | |||||| |||| |
|
|
| T |
22081621 |
attgacctcattcaagagatttatttattatccttggcttttgactttccatcattcgttgagggaaggtaatatctgtgcagattagttagcgaaatac |
22081522 |
T |
|
| Q |
273 |
aaagcaatattgaagggtgatgcaattgcttggagttaatgttcaactcctttttcgactac |
334 |
Q |
| |
|
| ||||| ||| ||| ||| |||| |||||||| |||||| |||| || |||||||||| |
|
|
| T |
22081521 |
atagcaagattagaggatgactcaatcgcttggaggcaatgttaaacttctctttcgactac |
22081460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 74 - 240
Target Start/End: Original strand, 1582996 - 1583162
Alignment:
| Q |
74 |
gaataatggctttcaacatgttgaatgtgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacccttatgcacatgtt |
173 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||| || || |||| |||||||||||||| | ||||| ||||| |||| |||||| | || |
|
|
| T |
1582996 |
gaataatggctttcgacatgttgaatgtaaatcagattatcagtcggctttgactttgattaagggacgagttatgacaactcacctctatgcatctatt |
1583095 |
T |
|
| Q |
174 |
attgacctaattatttggtttattggttatctttggctcttgtctttccatcattccttgagggaag |
240 |
Q |
| |
|
|||||||| |||| | ||||||| ||||| |||||| ||| |||||||||||||||||||||||| |
|
|
| T |
1583096 |
attgacctcattaagagatttattgattatccttggctattgactttccatcattccttgagggaag |
1583162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 22081787 - 22081755
Alignment:
| Q |
39 |
ttgtggtattactaccaatatgaatgcatagct |
71 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
22081787 |
ttgtggtattactaccaatatgaatgcagagct |
22081755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 254
Target Start/End: Original strand, 19224305 - 19224485
Alignment:
| Q |
74 |
gaataatggctttcaacatgttgaatgtgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacccttatgcacatgtt |
173 |
Q |
| |
|
||||||||| ||| || |||||||||||||||||||| ||| |||| | ||||||||||||| ||||| | ||||| ||| ||||||||| |||| |
|
|
| T |
19224305 |
gaataatggattttgacctgttgaatgtgaatcagattgttaattggctttggttttgattaaggaaagagtttcgacaactcactcttatgcacctgtt |
19224404 |
T |
|
| Q |
174 |
attgacctaattatttggtttattggttatctttggctcttgtctttccatcattccttgagggaagttcatagatgtgcg |
254 |
Q |
| |
|
|||||||| ||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
19224405 |
attgacctcattgagaggtttattgattaaccttggctcttgtctttccatcattccttgagggaaggtaatagttgtgcg |
19224485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 39334824 - 39334711
Alignment:
| Q |
74 |
gaataatggctttcaacatgttgaatgtgaatcagatttgcaatcagcttggactttgatt-aaggaaggagttccaacaacccacccttatgcacatgt |
172 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||||| ||| |||||| ||| |||||||||| |||||||||||||| || | || |||||||||| ||| |
|
|
| T |
39334824 |
gaataatgactttcgacatgttgagtgtgaatcaaattaccaatcaactttgactttgatttaaggaaggagttccggcatctcatccttatgcacttgt |
39334725 |
T |
|
| Q |
173 |
tattgacctaatta |
186 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
39334724 |
tattgacctcatta |
39334711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 51272969 - 51272911
Alignment:
| Q |
101 |
tgaatcagatttgcaatcagcttggactttgattaaggaaggagttccaacaacccacc |
159 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| |||||| ||||||||||||| |||| |
|
|
| T |
51272969 |
tgaatcagattgtcaatcggctttgactttgatcaaggaatgagttccaacaactcacc |
51272911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 11324631 - 11324703
Alignment:
| Q |
74 |
gaataatggctttcaacatgttgaatgtgaatcagatttgcaatcagcttggactttgattaaggaaggagtt |
146 |
Q |
| |
|
|||||||||||||| |||| || ||||||||| ||||| | || |||| |||||||||||||||||||||| |
|
|
| T |
11324631 |
gaataatggctttcgacattttaaatgtgaattagattgttattcggctttgactttgattaaggaaggagtt |
11324703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University