View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10856_low_1 (Length: 437)

Name: NF10856_low_1
Description: NF10856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10856_low_1
NF10856_low_1
[»] chr3 (12 HSPs)
chr3 (133-341)||(37635401-37635609)
chr3 (133-341)||(37643690-37643898)
chr3 (133-341)||(37638315-37638523)
chr3 (133-341)||(37646603-37646811)
chr3 (133-341)||(37649516-37649724)
chr3 (133-341)||(37652433-37652644)
chr3 (11-108)||(37635280-37635377)
chr3 (11-108)||(37638194-37638291)
chr3 (11-108)||(37646482-37646579)
chr3 (11-108)||(37649395-37649492)
chr3 (11-107)||(37643569-37643665)
chr3 (11-90)||(37652307-37652386)
[»] chr2 (1 HSPs)
chr2 (11-64)||(5884252-5884305)
[»] chr4 (1 HSPs)
chr4 (11-51)||(32388617-32388657)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 133 - 341
Target Start/End: Original strand, 37635401 - 37635609
Alignment:
Q  133 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctcctccttactggaagaagatagttgcttttctatggaacgc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37635401 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctcctccttattggaagaagatagttgcttttctatggaacgc 37635500  T
Q  233 atttgtaaccttcttatacaattgcttcaacatttttccaccattcaaacatctttggtttcccttaattttctgatcttgaattccttattgaacgctt 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  37635501 atttgtaaccttcttatacaattgcttcaacatttttccaccattcaaacatctttggtttcccttaattttctgatcgtgaattccttattgaacgctc 37635600  T
Q  333 tacttctca 341  Q
    |||||||||    
T  37635601 tacttctca 37635609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 133 - 341
Target Start/End: Original strand, 37643690 - 37643898
Alignment:
Q  133 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctcctccttactggaagaagatagttgcttttctatggaacgc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37643690 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctcctccttattggaagaagatagttgcttttctatggaacgc 37643789  T
Q  233 atttgtaaccttcttatacaattgcttcaacatttttccaccattcaaacatctttggtttcccttaattttctgatcttgaattccttattgaacgctt 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  37643790 atttgtaaccttcttatacaattgcttcaacatttttccaccattcaaacatctttggtttcccttaattttctgatcgtgaattccttattgaacgctc 37643889  T
Q  333 tacttctca 341  Q
    |||||||||    
T  37643890 tacttctca 37643898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 133 - 341
Target Start/End: Original strand, 37638315 - 37638523
Alignment:
Q  133 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctcctccttactggaagaagatagttgcttttctatggaacgc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37638315 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctcctccttattggaagaagatagttgcttttctatggaacgc 37638414  T
Q  233 atttgtaaccttcttatacaattgcttcaacatttttccaccattcaaacatctttggtttcccttaattttctgatcttgaattccttattgaacgctt 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||     
T  37638415 atttgtaaccttcttatacaattgcttcaacatttttccaccattcaaacatctttggtttcccttaattttctgatcgtgaattccttattgaacactc 37638514  T
Q  333 tacttctca 341  Q
    |||||||||    
T  37638515 tacttctca 37638523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 133 - 341
Target Start/End: Original strand, 37646603 - 37646811
Alignment:
Q  133 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctcctccttactggaagaagatagttgcttttctatggaacgc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37646603 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctcctccttattggaagaagatagttgcttttctatggaacgc 37646702  T
Q  233 atttgtaaccttcttatacaattgcttcaacatttttccaccattcaaacatctttggtttcccttaattttctgatcttgaattccttattgaacgctt 332  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  37646703 atttgtaacattcttatacaattgcttcaacatttttccaccattcaaacatctttggtttcccttaattttctgatcgtgaattccttattgaacgctc 37646802  T
Q  333 tacttctca 341  Q
    |||||||||    
T  37646803 tacttctca 37646811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 133 - 341
Target Start/End: Original strand, 37649516 - 37649724
Alignment:
Q  133 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctcctccttactggaagaagatagttgcttttctatggaacgc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37649516 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctcctccttattggaagaagatagttgcttttctatggaacgc 37649615  T
Q  233 atttgtaaccttcttatacaattgcttcaacatttttccaccattcaaacatctttggtttcccttaattttctgatcttgaattccttattgaacgctt 332  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  37649616 atttgtaaccttcttatacaattgcttcaacatttttccacccttcaaacatctttggtttcccttaattttctgatcgtgaattccttattgaacgctc 37649715  T
Q  333 tacttctca 341  Q
    |||||||||    
T  37649716 tacttctca 37649724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 133 - 341
Target Start/End: Original strand, 37652433 - 37652644
Alignment:
Q  133 gataaaagaaatagaatagtagaaaagagagaatgagatgaaactcttatttcctatctcctcctt---actggaagaagatagttgcttttctatggaa 229  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||||||||||||| ||| |||    
T  37652433 gataaaagaaataaaatgctagaaaagagagaatgagatgaaactcttatttcctatctcctccttcttattggaagaagatagttgcttttttattgaa 37652532  T
Q  230 cgcatttgtaaccttcttatacaattgcttcaacatttttccaccattcaaacatctttggtttcccttaattttctgatcttgaattccttattgaacg 329  Q
    | |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||  |||||| |||||||||||||||| |||||||    
T  37652533 cacatttgtaaccttcttataccattgcttcaacatttttccatcattcaaaaatctttggtttcccgaaattttgtgatcttgaattccttgttgaacg 37652632  T
Q  330 ctttacttctca 341  Q
    || |||||||||    
T  37652633 ctctacttctca 37652644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 37635280 - 37635377
Alignment:
Q  11 cataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaagaggcatagcataaaagctaacaccgctccacgaccc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37635280 cataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaaaaggcatagcataaaagctaacaccgctccacgaccc 37635377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 37638194 - 37638291
Alignment:
Q  11 cataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaagaggcatagcataaaagctaacaccgctccacgaccc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37638194 cataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaaaaggcatagcataaaagctaacaccgctccacgaccc 37638291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 37646482 - 37646579
Alignment:
Q  11 cataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaagaggcatagcataaaagctaacaccgctccacgaccc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37646482 cataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaaaaggcatagcataaaagctaacaccgctccacgaccc 37646579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 37649395 - 37649492
Alignment:
Q  11 cataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaagaggcatagcataaaagctaacaccgctccacgaccc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37649395 cataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaaaaggcatagcataaaagctaacaccgctccacgaccc 37649492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 37643569 - 37643665
Alignment:
Q  11 cataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaagaggcatagcataaaagctaacaccgctccacgacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  37643569 cataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacacctaaaaggcatagcataaaagctaacaccgctccacgacc 37643665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 37652307 - 37652386
Alignment:
Q  11 cataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtgacgcctaagaggcatagcataaaagct 90  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  37652307 cataggtaaccttccatgtatagtaaatgtaaggatcttcaccataaacggtgacgcctaagaggcatagcatcaaagct 37652386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 5884252 - 5884305
Alignment:
Q  11 cataggtaaccttccatgtatagtaaatgtaaggatcttcaccgtaaacggtga 64  Q
    |||||||||| ||||||||  ||||||||||||| |||||||| ||||| ||||    
T  5884252 cataggtaacattccatgtgaagtaaatgtaagggtcttcaccataaacagtga 5884305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 32388617 - 32388657
Alignment:
Q  11 cataggtaaccttccatgtatagtaaatgtaaggatcttca 51  Q
    ||||||||||||||||||||||||| |  ||||||||||||    
T  32388617 cataggtaaccttccatgtatagtacacataaggatcttca 32388657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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