View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10856_low_2 (Length: 435)
Name: NF10856_low_2
Description: NF10856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10856_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 55169395 - 55169005
Alignment:
| Q |
18 |
atatgggaaggtcctcttgctgtgagaaaggtcacataaacaaaggagcatggagcaaagaagaagatgagcggctgatagcttatattagagctcacgg |
117 |
Q |
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| T |
55169395 |
atatgggaaggtccccttgctgtgagaaaggtcacataaacaaaggagcatggagcaaagaagaagatgagcggctg----------------ctcacgg |
55169312 |
T |
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| Q |
118 |
tgagggatgctggcgctctctccgaaaagccgctggtcttctccgttgcggtaagagttgccgtctccggtggatcaactacctccgccccgacctcaaa |
217 |
Q |
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| T |
55169311 |
tgagggatgctggcgctctctcccaaaagccgctggtcttctccgttgcggtaagagttgccgtctccggtggatcaactacctacgccccgacctcaaa |
55169212 |
T |
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| Q |
218 |
cgtggaaatttcacccaacaagaagatcaactcatcataaaactccacactctcctcggtaacaagtaagctacactatcgttcttgagtatttttagac |
317 |
Q |
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| T |
55169211 |
cgtggaaatttcacccaacaagaagatcaactcatcataaaactccacactctcctcggtaacaagtaagctacactatcgttcttgagtatttttagac |
55169112 |
T |
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| Q |
318 |
tttaccccaatttgatctttcgtaatttccttgcaactagtcttggatnnnnnnnttatatccaaactagtcacttagatttttatatagggtcgtatta |
417 |
Q |
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| T |
55169111 |
ttta-cccaatttgatctttcgtaatttccttgcaactagtcttatataaaaaaattatatccaaactagtcacttagatttttatatagggtcgcatta |
55169013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 27808038 - 27808307
Alignment:
| Q |
18 |
atatgggaaggtcctcttgctgtgagaaaggtcacataaacaaaggagcatggagcaaagaagaagatgagcggctgatagcttatattagagctcacgg |
117 |
Q |
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|||||||||| || |||| ||||| |||| ||| | |||||||||||| |||| |||||||||||||| | || ||| | |||||||| || || || |
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| T |
27808038 |
atatgggaagatcaccttgttgtgaaaaagctcatacaaacaaaggagcttggacaaaagaagaagatgatagacttatatcatatattagggcacatgg |
27808137 |
T |
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| Q |
118 |
tgagggatgctggcgctctctccgaaaagccgctggtcttctccgttgcggtaagagttgccgtctccggtggatcaactacctccgccccgacctcaaa |
217 |
Q |
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||| || || ||| | ||||||| ||||| ||||| | ||||| || ||||| ||||| |||||||||||||| ||||| ||| | || ||||| ||| |
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| T |
27808138 |
tgaaggttgttggagatctctccctaaagcagctggcttactccgatgtggtaaaagttgtcgtctccggtggattaactatctcaggccagaccttaaa |
27808237 |
T |
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| Q |
218 |
cgtggaaatttcacccaacaagaagatcaactcatcataaaactccacactctcctcggtaacaagtaag |
287 |
Q |
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| T |
27808238 |
cgtggtaactttacagaagaagaagatgaactcatcatcaaactccatagtcttcttggtaacaagtaag |
27808307 |
T |
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