View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10856_low_6 (Length: 264)

Name: NF10856_low_6
Description: NF10856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10856_low_6
NF10856_low_6
[»] chr7 (8 HSPs)
chr7 (17-264)||(24905497-24905744)
chr7 (18-263)||(9627623-9627868)
chr7 (113-264)||(35515545-35515696)
chr7 (192-264)||(10065098-10065170)
chr7 (194-264)||(29375311-29375381)
chr7 (34-77)||(35515738-35515781)
chr7 (194-264)||(14316011-14316081)
chr7 (199-264)||(10274902-10274967)
[»] chr2 (4 HSPs)
chr2 (17-170)||(29690630-29690783)
chr2 (17-263)||(12606284-12606530)
chr2 (215-264)||(2168120-2168169)
chr2 (194-264)||(27008669-27008739)
[»] chr1 (7 HSPs)
chr1 (17-258)||(42785261-42785502)
chr1 (196-257)||(17127913-17127974)
chr1 (130-264)||(23451552-23451686)
chr1 (192-264)||(42475737-42475809)
chr1 (196-257)||(9484274-9484335)
chr1 (196-257)||(25392928-25392989)
chr1 (174-263)||(44889658-44889747)
[»] chr3 (3 HSPs)
chr3 (18-257)||(23049545-23049783)
chr3 (18-257)||(25408197-25408436)
chr3 (194-257)||(25845145-25845208)
[»] chr5 (6 HSPs)
chr5 (18-251)||(22936391-22936624)
chr5 (198-264)||(32251612-32251678)
chr5 (18-59)||(804829-804870)
chr5 (196-264)||(18967275-18967343)
chr5 (198-258)||(32018595-32018655)
chr5 (193-257)||(39839333-39839397)
[»] chr4 (5 HSPs)
chr4 (18-263)||(13609378-13609623)
chr4 (179-264)||(32807981-32808066)
chr4 (17-117)||(32807862-32807962)
chr4 (157-257)||(13156865-13156965)
chr4 (198-239)||(40155389-40155430)
[»] chr8 (2 HSPs)
chr8 (191-264)||(29287489-29287562)
chr8 (194-263)||(16839723-16839792)
[»] chr6 (2 HSPs)
chr6 (199-264)||(17293342-17293407)
chr6 (194-248)||(29599753-29599807)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 24905497 - 24905744
Alignment:
Q  17 acctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaataggaccatt 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24905497 acctatcatgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcagagacaccgcatcatcaataggaccatt 24905596  T
Q  117 aacatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacactt 216  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24905597 aacagacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacactt 24905696  T
Q  217 tgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaac 264  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  24905697 tgaagtaaaagcctaagttcccccactaactcctcttcccacccaaac 24905744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 9627868 - 9627623
Alignment:
Q  18 cctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaataggaccatta 117  Q
    ||||||||| |||||||||||| |||| |  ||||||||||||||||  | ||| ||||||||| |   ||  | ||| || | |||||||  | |||||    
T  9627868 cctatcacgaaacagacgccaagcaaaaattaccaccttcaaaggaacgttcttgtgccacaaagaggacatgggcactgcttgatcaataacaacatta 9627769  T
Q  118 acatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacacttt 217  Q
     ||| ||| || |||||||||| ||  |  |||||||| || ||||||| ||||| ||| || || || || || ||||||||||||||||||  | |||    
T  9627768 gcattcaaaaatttataagcacatcaaattgtataaacagaagatgttttcaacctccacagtctcctatcaactctatcaacctgcaaagtggtatttt 9627669  T
Q  218 gaagtaaaagcctaagttcccccaccaactcctcttcccacccaaa 263  Q
    ||||||||||||||||||||| ||| |||||||| |||||| ||||    
T  9627668 gaagtaaaagcctaagttccctcactaactcctcctcccacgcaaa 9627623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 113 - 264
Target Start/End: Complemental strand, 35515696 - 35515545
Alignment:
Q  113 cattaacatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgac 212  Q
    ||||||||| ||| || |||||||||||||| || ||||| || || ||||| |||||   ||| ||||| || ||||  ||||||||||||||| | ||    
T  35515696 cattaacattcaaaaaattataagcacttcgaactgtatacactgaagatgtgtccaatttccacagcctcctatcgatgctatcaacctgcaaattaac 35515597  T
Q  213 actttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaac 264  Q
    | ||||||||| ||||||||| |||||||| |||| |||||||||| |||||    
T  35515596 attttgaagtagaagcctaagatcccccactaacttctcttcccacgcaaac 35515545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 10065098 - 10065170
Alignment:
Q  192 cctatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaac 264  Q
    |||||| ||||||||||| ||| |  |||| ||| |||||||||||||||| ||||||||||||||| |||||    
T  10065098 cctatccacctgcaaagttacattaagaagcaaatgcctaagttcccccactaactcctcttcccacgcaaac 10065170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 29375311 - 29375381
Alignment:
Q  194 tatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaac 264  Q
    |||||||||||||||  || || |||||||| |   ||||||||||||||||||||||||||||| |||||    
T  29375311 tatcaacctgcaaagccaccctgtgaagtaataaaataagttcccccaccaactcctcttcccacacaaac 29375381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 35515781 - 35515738
Alignment:
Q  34 cgccaaacaaataacaccaccttcaaaggaatttccttctgcca 77  Q
    ||||||||||||| |||||||||||||||||| ||||| |||||    
T  35515781 cgccaaacaaatagcaccaccttcaaaggaatgtccttatgcca 35515738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 14316011 - 14316081
Alignment:
Q  194 tatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaac 264  Q
    |||||||||||||| | ||| |||||||||| |  | |||||||||||||| |||||| |||||| |||||    
T  14316011 tatcaacctgcaaattcacattttgaagtaataaacaaagttcccccaccagctcctcctcccacacaaac 14316081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 10274967 - 10274902
Alignment:
Q  199 acctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaac 264  Q
    |||| |||||| ||| |||| ||||| | ||||||||||||||||| |||||| |||||| |||||    
T  10274967 acctccaaagtcacagtttggagtaataacctaagttcccccaccacctcctcctcccacgcaaac 10274902  T

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Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 29690783 - 29690630
Alignment:
Q  17 acctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaataggaccatt 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||| ||||||||||||||||||| |||||    
T  29690783 acctatcacgtaacagacgccaaacaaataacaccacctacaaagaaacttccttcagccacaaataatgcacatacaccgcatcatcaatagggccatt 29690684  T
Q  117 aacatacaagaagttataagcacttcggacagtataaacggatgatgtttccaa 170  Q
    || | |||||||||||||||||||||| |||||||||||||||||||| |||||    
T  29690683 aatagacaagaagttataagcacttcgaacagtataaacggatgatgtatccaa 29690630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 12606530 - 12606284
Alignment:
Q  17 acctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaataggaccatt 116  Q
    |||||||||| | ||  ||||||  |||||| || |||||||| |||| ||||||| ||||||||||| || | |||||||| ||||||  |||| ||||    
T  12606530 acctatcacgaagcaaccgccaagaaaataaaacaaccttcaatggaacttccttcagccacaaataaggctctgacaccgcctcatcagcaggagcatt 12606431  T
Q  117 aacatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacactt 216  Q
    | || |||| || ||||||||||| || ||||||||||| || |||||||| |||||||| | |||| |||| ||||| |||||||||||||||||||||    
T  12606430 atcagacaacaatttataagcactacgaacagtataaacagaagatgtttctaaccgccataaccttttgtcaaccctgtcaacctgcaaagtgacactt 12606331  T
Q  217 tgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaa 263  Q
    ||||||||||||||||| |||||||| ||||||||||| ||| ||||    
T  12606330 tgaagtaaaagcctaagatcccccactaactcctcttctcacgcaaa 12606284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 2168120 - 2168169
Alignment:
Q  215 tttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaac 264  Q
    |||||||||| |  |||||||||||||||||||||||||||||| |||||    
T  2168120 tttgaagtaatattctaagttcccccaccaactcctcttcccacgcaaac 2168169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 27008739 - 27008669
Alignment:
Q  194 tatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaac 264  Q
    |||||||||||||||| ||| | |||||||  |   |||||||||||||||||||||| |||||| |||||    
T  27008739 tatcaacctgcaaagtcacattatgaagtagtaatataagttcccccaccaactcctcctcccacgcaaac 27008669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 42785502 - 42785261
Alignment:
Q  17 acctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaataggaccatt 116  Q
    |||||||||||||||| |||||| ||||||||| ||||||||| |||| ||||||  | ||||| | || |||| ||||| || |||| | |  | ||||    
T  42785502 acctatcacgtaacaggcgccaagcaaataacatcaccttcaagggaacttccttgagacacaagttatacacatacacctcagcatcgacactagcatt 42785403  T
Q  117 aacatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacactt 216  Q
    ||||  ||| || ||||| |||||||  |||||||||||  | ||||||||||| |||||||||||||| |||||| | || || |||||||||||||||    
T  42785402 aacagtcaaaaatttatatgcacttcaaacagtataaacaaaagatgtttccaatcgccaaagccttctatcgaccttgtccacttgcaaagtgacactt 42785303  T
Q  217 tgaagtaaaagcctaagttcccccaccaactcctcttcccac 258  Q
    ||||||||||||||||||||| | || || ||||||||||||    
T  42785302 tgaagtaaaagcctaagttcctctactaattcctcttcccac 42785261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 17127974 - 17127913
Alignment:
Q  196 tcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttccca 257  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||||||    
T  17127974 tcaacctgcaaagaaacattttgaagtaaaagcctaagttcccccactaactcctcttccca 17127913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 264
Target Start/End: Complemental strand, 23451686 - 23451552
Alignment:
Q  130 ttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacactttgaagtaaaagcc 229  Q
    ||||||||||| || || || || ||||| |||||||| || ||||| | |||||| || ||||||||||||||||||| |||| |  | ||| ||||||    
T  23451686 ttataagcactgcgaactgtgtacacggaagatgtttctaatcgccacaaccttctatcaaccctatcaacctgcaaagagacattaaggagtcaaagcc 23451587  T
Q  230 taagttcccccaccaactcctcttcccacccaaac 264  Q
    |||  ||||| |||  |||||| |||||| |||||    
T  23451586 taatatcccctacctcctcctcctcccacacaaac 23451552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 42475809 - 42475737
Alignment:
Q  192 cctatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaac 264  Q
    |||||| ||||||||||| ||| |  |||| ||| | |||||||||||||| ||||||||||||||| |||||    
T  42475809 cctatccacctgcaaagttacattaagaagcaaatgtctaagttcccccactaactcctcttcccacacaaac 42475737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 9484335 - 9484274
Alignment:
Q  196 tcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttccca 257  Q
    |||||||||||||| | | |||||||||| |  ||||||||||||||||||||  |||||||    
T  9484335 tcaacctgcaaagtcaaattttgaagtaataatctaagttcccccaccaactctccttccca 9484274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 25392928 - 25392989
Alignment:
Q  196 tcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttccca 257  Q
    |||||||||||||| ||| | ||||| |  | |||||||||||||||||||||||| |||||    
T  25392928 tcaacctgcaaagtcacattatgaagaagtaacctaagttcccccaccaactcctcctccca 25392989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 44889658 - 44889747
Alignment:
Q  174 ccaaagccttctgtcgaccctatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaa 263  Q
    |||||||| ||| ||  |||| |||||||||||||| ||| |||||||||| |  | ||||||||| |||  ||||||||||||| ||||    
T  44889658 ccaaagccatctatcctccctgtcaacctgcaaagttacattttgaagtaataaacaaagttcccctaccttctcctcttcccacacaaa 44889747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 23049783 - 23049545
Alignment:
Q  18 cctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaataggaccatta 117  Q
    |||||| || |||| || |||| ||||||||||||||||||||||||| ||||| ||||| | | ||  ||||  |||||||   |||| || | |||||    
T  23049783 cctatcccgaaacaaactccaagcaaataacaccaccttcaaaggaatgtccttatgccaaagagaagccacatgcaccgcaatgtcaacagtaacatta 23049684  T
Q  118 acatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacacttt 217  Q
    |||| ||| || |||||||||||||| || |||||||| |  |||||||||| || ||| ||||| || | || |||||||||||| ||| | ||| |||    
T  23049683 acat-caaaaaattataagcacttcgaactgtataaactggagatgtttccagcctccacagcctcctattgatcctatcaacctgtaaattaacatttt 23049585  T
Q  218 gaagtaaaagcctaagttcccccaccaactcctcttccca 257  Q
    |||||| |||||||||||||||||| || |||||||||||    
T  23049584 gaagtagaagcctaagttcccccactaattcctcttccca 23049545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 25408436 - 25408197
Alignment:
Q  18 cctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaataggaccatta 117  Q
    ||||||||| |||||||||||| |||| || || |||||||||||||  ||||| ||||| | | ||  || || |||| ||| ||||||| ||   | |    
T  25408436 cctatcacgaaacagacgccaagcaaacaatacaaccttcaaaggaacatccttatgccagagagaagacataggcaccacatgatcaatacgagactga 25408337  T
Q  118 acatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacacttt 217  Q
    |||| |||  | ||||||||||| || ||| |||||||||| ||||  |||||   |||||||| | | ||  || | |||||||||||||| ||| |||    
T  25408336 acattcaaacaattataagcactacgaacaatataaacggaagatgactccaatatccaaagccatttatcttccatgtcaacctgcaaagtaacatttt 25408237  T
Q  218 gaagtaaaagcctaagttcccccaccaactcctcttccca 257  Q
     |||||| |||||||| |||||||||||||||||||||||    
T  25408236 aaagtaatagcctaagatcccccaccaactcctcttccca 25408197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 25845208 - 25845145
Alignment:
Q  194 tatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttccca 257  Q
    |||||||||||||||||||| | |||||||| |  ||||||||  ||||||||||||| |||||    
T  25845208 tatcaacctgcaaagtgacattatgaagtaataatctaagttcgtccaccaactcctcctccca 25845145  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 22936624 - 22936391
Alignment:
Q  18 cctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaataggaccatta 117  Q
    ||||||| | |||||||||||  |||| | |||||||||||||||||  | ||| ||||||||| ||  ||| | |||||| | ||||| || | |||||    
T  22936624 cctatcatgaaacagacgccaggcaaaaatcaccaccttcaaaggaacgttcttgtgccacaaagaagacacgggcaccgcttgatcaacagcaacatta 22936525  T
Q  118 acatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacacttt 217  Q
     ||| ||| || |||||||||||||| |  ||||||||  | |||||||| |||| ||| |  ||  | || || ||||||||||||||||||||| |||    
T  22936524 gcattcaaaaatttataagcacttcgaattgtataaacataagatgtttctaacctccacaatctcatatcaactctatcaacctgcaaagtgacatttt 22936425  T
Q  218 gaagtaaaagcctaagttcccccaccaactcctc 251  Q
    |||||| ||  |||||||||||||| ||||||||    
T  22936424 gaagtataattctaagttcccccactaactcctc 22936391  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 32251678 - 32251612
Alignment:
Q  198 aacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaac 264  Q
    |||||||||||| ||| | | ||||||| ||||||||||||| ||||||||||| |||||| |||||    
T  32251678 aacctgcaaagttacattgtcaagtaaaggcctaagttcccctaccaactcctcctcccacgcaaac 32251612  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 804829 - 804870
Alignment:
Q  18 cctatcacgtaacagacgccaaacaaataacaccaccttcaa 59  Q
    ||||||||||||||| |||||| |||||| ||||||||||||    
T  804829 cctatcacgtaacagtcgccaagcaaatagcaccaccttcaa 804870  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 18967343 - 18967275
Alignment:
Q  196 tcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaac 264  Q
    ||||||| |||||| ||| |||||||||| | |||||| ||| |||||||||||  ||||||| |||||    
T  18967343 tcaacctacaaagttacattttgaagtaataacctaagctcctccaccaactccctttcccacgcaaac 18967275  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 32018595 - 32018655
Alignment:
Q  198 aacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttcccac 258  Q
    |||||| ||||  ||| ||||||||||||||||||| ||||| |||||||| || ||||||    
T  32018595 aacctgaaaagaaacattttgaagtaaaagcctaagctcccctaccaactcttcctcccac 32018655  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 39839397 - 39839333
Alignment:
Q  193 ctatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttccca 257  Q
    ||||||||||||||||| ||||  |||||||| | | |||  |||| ||||||||||||||||||    
T  39839397 ctatcaacctgcaaagtcacaccatgaagtaataacataaactccctcaccaactcctcttccca 39839333  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 13609378 - 13609623
Alignment:
Q  18 cctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaataggaccatta 117  Q
    ||||||||| |||||||||||| |||| |  ||||||||||||||||  | ||| ||||||||| |   ||  | ||| || | |||||||  | |||||    
T  13609378 cctatcacgaaacagacgccaagcaaaaattaccaccttcaaaggaacgttcttgtgccacaaagaggacatgggcactgcttgatcaataacaacatta 13609477  T
Q  118 acatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacacttt 217  Q
     ||| ||| || |||||||||| ||  |  |||||||| || ||||||| ||||| ||| || || || || || ||||||||||||||||||  | |||    
T  13609478 gcattcaaaaatttataagcacatcaaattgtataaacagaagatgttttcaacctccacagtctcctatcaactctatcaacctgcaaagtggtatttt 13609577  T
Q  218 gaagtaaaagcctaagttcccccaccaactcctcttcccacccaaa 263  Q
    ||||||||||||||||||||| ||| |||||||| |||||| ||||    
T  13609578 gaagtaaaagcctaagttccctcactaactcctcctcccacgcaaa 13609623  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 32807981 - 32808066
Alignment:
Q  179 gccttctgtcgaccctatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaac 264  Q
    ||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| | ||| ||||||||| |||||    
T  32807981 gccttctatcgaccctgtcaacctgcaaagtgacactttgaactaaaagcctaagttctcccactagctcttcttcccacgcaaac 32808066  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 32807862 - 32807962
Alignment:
Q  17 acctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaataggaccatt 116  Q
    |||||||| ||||||  |||||||||||||||||||||||||| |||| ||||||  ||||||||| | ||||| ||||| || |||||| |||| ||||    
T  32807862 acctatcaagtaacatgcgccaaacaaataacaccaccttcaagggaacttccttaagccacaaatgaggcacatacacctcaacatcaacaggagcatt 32807961  T
Q  117 a 117  Q
    |    
T  32807962 a 32807962  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 13156965 - 13156865
Alignment:
Q  157 gatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttccc 256  Q
    ||||| || |||| |||||||| || ||| |||||||| || ||||||||||| ||| |  ||||||||||| ||||| |||||||||||||||| ||||    
T  13156965 gatgaagtatccagccgccaaatccatctatcgaccctgtctacctgcaaagtaacattcagaagtaaaagcataagtgcccccaccaactcctcctccc 13156866  T
Q  257 a 257  Q
    |    
T  13156865 a 13156865  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 40155389 - 40155430
Alignment:
Q  198 aacctgcaaagtgacactttgaagtaaaagcctaagttcccc 239  Q
    |||||||||||| ||| ||||||||||||||||||| |||||    
T  40155389 aacctgcaaagtaacattttgaagtaaaagcctaagatcccc 40155430  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 29287489 - 29287562
Alignment:
Q  191 ccctatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaac 264  Q
    |||| |||||||||||||| ||| | |||||||| | ||||||||||||||||||||||||||||||| |||||    
T  29287489 ccctgtcaacctgcaaagtaacattatgaagtaacatcctaagttcccccaccaactcctcttcccacacaaac 29287562  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 16839792 - 16839723
Alignment:
Q  194 tatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaa 263  Q
    ||||||| || |||| ||||||||||||||| |   | ||||||||||||| ||||||||||||| ||||    
T  16839792 tatcaacttgtaaagagacactttgaagtaataagattagttcccccaccacctcctcttcccacgcaaa 16839723  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 17293342 - 17293407
Alignment:
Q  199 acctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactcctcttcccacccaaac 264  Q
    ||||||||||| ||| |||||||||| | ||||||||||||||||||||| ||||||||| |||||    
T  17293342 acctgcaaagtcacattttgaagtaataacctaagttcccccaccaactcttcttcccacgcaaac 17293407  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 29599753 - 29599807
Alignment:
Q  194 tatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccaccaactc 248  Q
    |||||||||||||| ||||| |||||||||| | |||||| ||||||||||||||    
T  29599753 tatcaacctgcaaaatgacattttgaagtaacaacctaagctcccccaccaactc 29599807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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