View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10856_low_7 (Length: 253)
Name: NF10856_low_7
Description: NF10856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10856_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 34943367 - 34943104
Alignment:
| Q |
1 |
agaatctaataaagcgtgaaataaacttgtagggattacaaaacccaaagacaaagcagaaaatggggttaccttgtctagtctattatcccaccattta |
100 |
Q |
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| T |
34943367 |
agaatctaataaagcgtgaaataaacttgtagggattaaaaaacccaaagacaaagcagaaaatggggttaccttgtctagtctattatcccaccattta |
34943268 |
T |
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| Q |
101 |
gctggattttgcagcaaatcattccaggattcatcacctaaaccaagttgggaaaattgaaattgaacttaatatggcaataaaacggaaatagaaaagg |
200 |
Q |
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| T |
34943267 |
gctggattttgcagcaaatcattccaggattcatcacctaaaccaagttgggaaaattgaaattgaacttaatatggcaataaaacggaaatagaaaagg |
34943168 |
T |
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| Q |
201 |
a-------------catgaagaatcttgagttgcagagcacaaacaaaacagaaatagaaaaag |
251 |
Q |
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| T |
34943167 |
acatggaaaaaggacatgaagaatcttgagttgcagagcacaaacataacagaaatagaaaaag |
34943104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 34942702 - 34942557
Alignment:
| Q |
1 |
agaatctaataaagcgtgaaataaacttgtagggattacaaaacccaaagacaaagcagaaaatggggttaccttgtctagtctattatcccaccattta |
100 |
Q |
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|||||||||| |||| |||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34942702 |
agaatctaattaagcatgaaataaacttgtaggggttaaaaaatccaaagataaagcagaaaatggggttaccttgtctactctattatcccaccattta |
34942603 |
T |
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| Q |
101 |
gctggattttgcagcaaatcattccaggattcatcacctaaaccaa |
146 |
Q |
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| T |
34942602 |
gctgggttttgcagcaaatcattccaggactcatcacctaaaccaa |
34942557 |
T |
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