View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10856_low_9 (Length: 226)
Name: NF10856_low_9
Description: NF10856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10856_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 41702850 - 41702640
Alignment:
| Q |
1 |
cacatcaacttcattgttcttcttttctaacgcttcattactttttctatttaccttaacctctttcaagagagcttcataattttcttgcactttcgaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702850 |
cacatcaacttcattgttcttcttttctaacgcttcattactttttctatttaccttaacctctttcaagagagcttcataattttcttgcactttcgaa |
41702751 |
T |
|
| Q |
101 |
catatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702750 |
catatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaaagt |
41702651 |
T |
|
| Q |
201 |
cttgttgcaac |
211 |
Q |
| |
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||||||||||| |
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|
| T |
41702650 |
cttgttgcaac |
41702640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 211
Target Start/End: Original strand, 41469881 - 41470055
Alignment:
| Q |
46 |
tctatttaccttaacctctttcaagagagcttcataattttcttgcactttcgaacat---------atttcttctctttttctaaactcaaactcagca |
136 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||| |||||| |||||| || | ||||| |||||||| |||||||| |||||||| |
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| T |
41469881 |
tctatttaccttaacttctttcaaaagagcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactcagactcagca |
41469980 |
T |
|
| Q |
137 |
tgcaaccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaaagtcttgttgcaac |
211 |
Q |
| |
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| | |||||||||| |||| | || || || |||| ||||||| |||||||||||||||||| |||||||||| |
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|
| T |
41469981 |
tatacccttgaaagtctctctaagtgaaactcctctctaagcttaagtctctccatttcaaagctttgttgcaac |
41470055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 41509724 - 41509779
Alignment:
| Q |
142 |
ccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaa |
197 |
Q |
| |
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||||| |||| ||||||| ||||||| ||||| |||||||||||||||||| |||| |
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|
| T |
41509724 |
ccttgcaagtttctccatttcaagctcctcttgaagctttagtctctccatatcaa |
41509779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 41519950 - 41520005
Alignment:
| Q |
142 |
ccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaa |
197 |
Q |
| |
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||||| |||| ||||||| | ||||| ||||| ||||||||||||||||||||||| |
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|
| T |
41519950 |
ccttgcaagtttctccattttaagctcctcttgaagctttagtctctccatttcaa |
41520005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 41524534 - 41524585
Alignment:
| Q |
46 |
tctatttaccttaacctctttcaagagagcttcataattttcttgcactttc |
97 |
Q |
| |
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|||||| |||||||| |||||||| |||||||||||| ||||||| |||||| |
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| T |
41524534 |
tctattcaccttaacttctttcaaaagagcttcataactttcttgaactttc |
41524585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 197
Target Start/End: Complemental strand, 16638434 - 16638302
Alignment:
| Q |
65 |
ttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaa |
164 |
Q |
| |
|
|||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||||||| ||||||||| ||||||| |||| ||||||| | || |
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| T |
16638434 |
ttcaagagagcttcataacattcctgatctttcggacaaggttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaa |
16638335 |
T |
|
| Q |
165 |
gctgctctttaagctttagtctctccatttcaa |
197 |
Q |
| |
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||| | ||| ||||||| ||||| |||||||| |
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| T |
16638334 |
gctccccttgaagcttttgtctcggcatttcaa |
16638302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 197
Target Start/End: Original strand, 17457204 - 17457336
Alignment:
| Q |
65 |
ttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaa |
164 |
Q |
| |
|
|||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||||||| ||||||||| ||||||| |||| ||||||| | || |
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| T |
17457204 |
ttcaagagagcttcataacattcctgatctttcggacaaggttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaa |
17457303 |
T |
|
| Q |
165 |
gctgctctttaagctttagtctctccatttcaa |
197 |
Q |
| |
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||| | ||| ||||||| ||||| |||||||| |
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|
| T |
17457304 |
gctccccttgaagcttttgtctcggcatttcaa |
17457336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 197
Target Start/End: Complemental strand, 17596010 - 17595878
Alignment:
| Q |
65 |
ttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaa |
164 |
Q |
| |
|
|||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||||||| ||||||||| ||||||| |||| ||||||| | || |
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| T |
17596010 |
ttcaagagagcttcataacattcctgatctttcggacaaggttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaa |
17595911 |
T |
|
| Q |
165 |
gctgctctttaagctttagtctctccatttcaa |
197 |
Q |
| |
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||| | ||| ||||||| ||||| |||||||| |
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|
| T |
17595910 |
gctccccttgaagcttttgtctcggcatttcaa |
17595878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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