View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10857_high_1 (Length: 349)
Name: NF10857_high_1
Description: NF10857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10857_high_1 |
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| [»] scaffold0369 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 18648832 - 18648501
Alignment:
| Q |
1 |
atcaattgagagcagacccatgtatgataattggagccggaaagtactggagtaaccgtgacggaagaaggactgtcactgggatgcacgaagaagggac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
18648832 |
atcaattgagagcagacccatgtatgataattggagccggaaagtactggagtaaccgtgacggaagaaggaccgtcactaggatgcacgaagaagggac |
18648733 |
T |
|
| Q |
101 |
tggtttgatccatggaaggatcaattggaggaacaggagccaaacgaggcggcatgacaaataacggaagcaaaacttagatcgtttacacagcgaatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18648732 |
tggtttgatccatggaaggatcaattggaggaacaggagccaaacgaggcggcatgacaaataacggaagcgaaacttagatcgtttacacagcgaatga |
18648633 |
T |
|
| Q |
201 |
taccatgttaagaaaggtaaaattcatataaagaagaacataaatatgtgaatggaaattattctcattgaattgaaaagtgaaaatacaattctgatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18648632 |
taccatgttaagaaaggtaaaattcatataaagaagaacagaaatatgtgaatggaaattattctcattgaattgaaaagtggaaatacaattctgatat |
18648533 |
T |
|
| Q |
301 |
atagagaaagatggagcgtgcaaacggataat |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
18648532 |
atagagaaagatggagcgtgcaaacggataat |
18648501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 15535361 - 15535053
Alignment:
| Q |
17 |
cccatgtatgataattggagccggaaagtactggagtaaccgtgacggaagaaggactgtcactgggatgcacgaagaagggactggtttgatccatgga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15535361 |
cccatgtatgataattggagccggaaagtactggagtaaccgtgacagaagaaggaccgtcactgggatgcacgatgaagggactggtttgatccatgga |
15535262 |
T |
|
| Q |
117 |
aggatcaattggaggaacaggagccaaacgaggcggcatgacaaataacggaagcaaaacttagatcgtttacacagcgaatgataccatgttaagaaag |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15535261 |
aggatcaattggaggagcaggagccaaacgaggtggcatgacaaataacggaagcgaaacttagatcgtttacacaacgaatgataccatgttaagaaag |
15535162 |
T |
|
| Q |
217 |
gtaaaattcatataaagaagaacataaatatgtgaatggaaattattctcattg-aattgaaaagtgaaaatacaattctgatatatagagaaagatgga |
315 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15535161 |
gtaaaattcatataaagaagaacagagatatgtgaatggaaattattctcattgaaattgaaaagtggaaatacaattctgatatatagagaaagatgga |
15535062 |
T |
|
| Q |
316 |
gcgtgcaaa |
324 |
Q |
| |
|
|| |||||| |
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|
| T |
15535061 |
gcatgcaaa |
15535053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 205 - 324
Target Start/End: Complemental strand, 15538647 - 15538527
Alignment:
| Q |
205 |
atgttaagaaaggtaaaattcatataaagaagaacataaatatgtgaatggaaattattctcattg-aattgaaaagtgaaaatacaattctgatatata |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
15538647 |
atgttaagaaaggtaaaattcatataaagaagaacagagatatgtgaatggaaattattctcattgaaattgaaaagtggaaatacaattctgatatata |
15538548 |
T |
|
| Q |
304 |
gagaaagatggagcgtgcaaa |
324 |
Q |
| |
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||||||||||||||||||||| |
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| T |
15538547 |
gagaaagatggagcgtgcaaa |
15538527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 17384990 - 17384683
Alignment:
| Q |
17 |
cccatgtatgataattggagccggaaagtactggagtaaccgtgacggaagaaggactgtcactgggatgcacgaagaagggactggtttgatccatgga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17384990 |
cccatgtatgataattggagccggaaagtaccggagtaaccgtgacggaagaaggaccgtcactgggatgcacgaagaagggactggtttgatccatgga |
17384891 |
T |
|
| Q |
117 |
aggatcaattggaggaacaggagccaaacgaggcggcatgacaaataacggaagcaaaacttagatcgtttacacagcgaatgataccatgttaagaaag |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17384890 |
aggatcaattggaggagtaggagccaaacgaggcggcatgacaaataacggaagcgaaacttagatcgtttacacagc-tctgataccatgttaagaaag |
17384792 |
T |
|
| Q |
217 |
gtaaaattcatataaagaagaacataaatatgtgaatggaaattattctcattga-attgaaaagtgaaaatacaattctgatatatagagaaagatgga |
315 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
17384791 |
gtaaaattcatataaagaagaacagaaatatgtgaatggaaattattctcattgagattgaaaagtggaaatacaattctaatatatagagaaagatgga |
17384692 |
T |
|
| Q |
316 |
gcgtgcaaa |
324 |
Q |
| |
|
||||||||| |
|
|
| T |
17384691 |
gcgtgcaaa |
17384683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 206 - 324
Target Start/End: Complemental strand, 17389518 - 17389399
Alignment:
| Q |
206 |
tgttaagaaaggtaaaattcatataaagaagaacataaatatgtgaatggaaattattctcattga-attgaaaagtgaaaatacaattctgatatatag |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
17389518 |
tgttaagaaaggtaaaattcatataaagaagaacagaaatatgtgaatggaaattattctcattgagattgaaaagtggaaatacaattctgatatatag |
17389419 |
T |
|
| Q |
305 |
agaaagatggagcgtgcaaa |
324 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
17389418 |
agaaagatggagcgtgcaaa |
17389399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 182 - 324
Target Start/End: Complemental strand, 31409690 - 31409547
Alignment:
| Q |
182 |
tcgtttacacagcgaatgataccatgttaagaaaggtaaaattcatataaagaagaacataaa-tatgtgaatggaaattattctcattgaattgaaaag |
280 |
Q |
| |
|
|||||||| || |||||||||||||||||| | | |||||||||||||||||||||| | ||| |||||||||| ||||||||||||||||||||||||| |
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|
| T |
31409690 |
tcgtttacgcatcgaatgataccatgttaaaagaagtaaaattcatataaagaagaaaaaaaaatatgtgaatgaaaattattctcattgaattgaaaag |
31409591 |
T |
|
| Q |
281 |
tgaaaatacaattctgatatatagagaaagatggagcgtgcaaa |
324 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
31409590 |
tggtaatacaattctgatttatagagaaagatggagcgtgcaaa |
31409547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0369 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0369
Description:
Target: scaffold0369; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 206 - 324
Target Start/End: Original strand, 13577 - 13695
Alignment:
| Q |
206 |
tgttaagaaaggtaaaattcatataaagaagaacataaatatgtgaatggaaattattctcattgaattgaaaagtgaaaatacaattctgatatataga |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
13577 |
tgttaagaaaggtaaaattcatataaagaagaacagaaatatgtgaatggaaattattctcattgaattgaaaagtggaaatacaattctgatatataga |
13676 |
T |
|
| Q |
306 |
gaaagatggagcgtgcaaa |
324 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
13677 |
gaaagatggagcgtgcaaa |
13695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 206 - 324
Target Start/End: Original strand, 31378278 - 31378397
Alignment:
| Q |
206 |
tgttaagaaaggtaaaattcatataaagaagaacataaatatgtgaatggaaattattctcattg-aattgaaaagtgaaaatacaattctgatatatag |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||| |
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|
| T |
31378278 |
tgttaagaaaggtaaaattcatataaagaagaatagaaatatgtgaatggaaattattctcattgaaattgaaaagtggaaatacaattcttatatatag |
31378377 |
T |
|
| Q |
305 |
agaaagatggagcgtgcaaa |
324 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
31378378 |
agaaaggtggagcgtgcaaa |
31378397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 7222421 - 7222316
Alignment:
| Q |
38 |
cggaaagtactggagtaaccgtgacggaagaaggactgtcactgggatgcacgaagaagggactggtttgatccatggaaggatcaattggaggaacagg |
137 |
Q |
| |
|
||||||| || |||||||| | |||||||||||||| || || ||||| ||||||||||| ||||||||| || ||||| |||| | ||||||| | |
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|
| T |
7222421 |
cggaaagaaccggagtaacagagacggaagaaggaccatcgctcggatgaacgaagaagggtgtggtttgatgcagagaagggtcaaccgtaggaacatg |
7222322 |
T |
|
| Q |
138 |
agccaa |
143 |
Q |
| |
|
|||||| |
|
|
| T |
7222321 |
agccaa |
7222316 |
T |
|
Back To:
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