View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10857_low_1 (Length: 477)
Name: NF10857_low_1
Description: NF10857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10857_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 460
Target Start/End: Original strand, 5592346 - 5592779
Alignment:
| Q |
9 |
agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtc |
108 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
5592346 |
agcagagaacttattattgaaatgatccactaaagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtc |
5592445 |
T |
|
| Q |
109 |
ccatgagtaaagatggcacttggagtgcagcccaataggcctaacccagataacacatattttcttgctccaatttcatgtaaagcctgttccatgtacc |
208 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
5592446 |
tcatgagtaaggatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttacatatacc |
5592545 |
T |
|
| Q |
209 |
aaatgcctctattataaaccatgatattcataactaatgtaacttccattaatcatttagtgaaagtaaaagtgaaacacaaagttcaagtggatacctg |
308 |
Q |
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|||||| ||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
5592546 |
aaatgcttctgttataaaccatgatattcata------------------aatcatttagtaaaagcaaaagtgaaacacaaagttcaagtggatacctg |
5592627 |
T |
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| Q |
309 |
taaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtggcttgttggatataattggggaagaaagtaattatttatg |
408 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| || ||||| | |||||||||||||||||||||||||||||||| |
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| T |
5592628 |
taaattcaaagataactcttcaattagattttctgcatactgctcagggctataaacgttgcttgatagatataattggggaagaaagtaattatttatg |
5592727 |
T |
|
| Q |
409 |
taatcattactgccaatatgcacataatataagcatttattaaggtattctt |
460 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
5592728 |
taatcattactgccaatatgcacataatacaagcatttgttaaggtattctt |
5592779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 5586077 - 5586329
Alignment:
| Q |
9 |
agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5586077 |
agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtc |
5586176 |
T |
|
| Q |
109 |
ccatgagtaaagatggcacttggagtgcagcccaataggcctaacccagataacacatattttcttgctccaatttcatgtaaagcctgttccatgtacc |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5586177 |
ccatgagtaaagatggcacttggagtgcagcccaatagacctaacccagataacacatattttcttgctccaatttcatgtaaagcctgttccatgtacc |
5586276 |
T |
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| Q |
209 |
aaatgcctctattataaaccatgatattcataactaatgtaacttccattaat |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5586277 |
aaatgcctctattataaaccatgatattcataactaatgtaacttccattaat |
5586329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 259 - 460
Target Start/End: Original strand, 5586352 - 5586553
Alignment:
| Q |
259 |
aatcatttagtgaaagtaaaagtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggc |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5586352 |
aatcatttagtgaaagtaaaagtgaaacacaaagttcaaggggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggc |
5586451 |
T |
|
| Q |
359 |
tataaatgtggcttgttggatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatataagcatttattaaggtattc |
458 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5586452 |
tataaatgtgtcttgttggatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatataagcatttattaaggtattc |
5586551 |
T |
|
| Q |
459 |
tt |
460 |
Q |
| |
|
|| |
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|
| T |
5586552 |
tt |
5586553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 302 - 457
Target Start/End: Original strand, 5572884 - 5573039
Alignment:
| Q |
302 |
atacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtggcttgttggatataattggggaagaaagtaatt |
401 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||||||||| |
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| T |
5572884 |
ataccagtaaattcaaagataactcttgaattagagcttctgcatactgctcagggctataaatgtgacttgttgggtagaattggggaagaaagtaatt |
5572983 |
T |
|
| Q |
402 |
atttatgtaatcattactgccaatatgcacataatataagcatttattaaggtatt |
457 |
Q |
| |
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||||||||||| ||||| ||||||| ||||||||| |||||||| |||||||||| |
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| T |
5572984 |
gtttatgtaatcgttacttccaatattcacataatacaagcatttgttaaggtatt |
5573039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 283 - 460
Target Start/End: Original strand, 5575896 - 5576073
Alignment:
| Q |
283 |
aaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtggcttgttggatata |
382 |
Q |
| |
|
||||||| |||| |||||||||| |||||| ||||||||||||| ||||||||||||||| || |||| |||||||||||| || |||||||| || | |
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| T |
5575896 |
aaacacagagtttgagtggataccaataaatttaaagataactcttgaattagagcttctgcatattgctcagggctataaatttgacttgttgggtaga |
5575995 |
T |
|
| Q |
383 |
attggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatataagcatttattaaggtattctt |
460 |
Q |
| |
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|||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |
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| T |
5575996 |
attgaggacgaaagtaattgtttatgtaatcattactgccaatattcacataatacaagcatttgctaaggtattctt |
5576073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 5575607 - 5575793
Alignment:
| Q |
13 |
gagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtcccat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||| ||||| |||| | |||||| ||| ||||| || ||||| | ||| |||| |
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| T |
5575607 |
gagaacttattattgaaatgatccactaaaaatttaagcttgaaattgaaaatcaatgcaggggcattttcctcatcaacgcaggacccgtttgttccat |
5575706 |
T |
|
| Q |
113 |
gagtaaagatggcacttggagtgcagcccaataggcctaacccagataacacatattttcttgctccaatttcatgtaaagcctgtt |
199 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||||| ||||| |
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| T |
5575707 |
gagtaaagatggcacttggtgtgcagcccaaaaggcctaaccctactaacacatattttctagctccaatgtcatgtaaagtctgtt |
5575793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 5572667 - 5572712
Alignment:
| Q |
9 |
agcagagaacttattattgaaatgatccactagagatttaagcttg |
54 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5572667 |
agcagagaacttattattgaaatgttccactagagatttaagcttg |
5572712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 5580486 - 5580531
Alignment:
| Q |
9 |
agcagagaacttattattgaaatgatccactagagatttaagcttg |
54 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5580486 |
agcagagaacttattattgaaatgttccactagagatttaagcttg |
5580531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 5580576 - 5580614
Alignment:
| Q |
159 |
taacacatattttcttgctccaatttcatgtaaagcctg |
197 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
5580576 |
taacacatattttcttgctccaatgtcatgtagagcctg |
5580614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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