View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_high_1 (Length: 599)
Name: NF10858_high_1
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 14 - 581
Target Start/End: Complemental strand, 1547749 - 1547172
Alignment:
| Q |
14 |
atggacatcacatatcccaaccattgacttacacatttggtttgtttgttcgccaagtcaacatggcatgttcagtttggttgagatgaaattctagagc |
113 |
Q |
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| T |
1547749 |
atggacatcacatatcccaaccattgacttacacatttggtttgtttgttcgccaagtcaacatggcatgttcagtttggttgagatgaaattctagagc |
1547650 |
T |
|
| Q |
114 |
caattccagttctatagttttggttgttgcaattaatttgaaccnnnnnnnnnnnncttaactccttttacttcatcaaaataacttaattacctccatg |
213 |
Q |
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| T |
1547649 |
caattccagttctatagtttttgttgttgcaattaatttgaaccttttttctttttcttaactccttttacttcatcaaaataacttaattacctccatg |
1547550 |
T |
|
| Q |
214 |
ttttcactccaatggactaattccaatttgctagcttatttttcccacaatagcaaactacttc---atttcaaaataaa-----agaggaatacaaagt |
305 |
Q |
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| T |
1547549 |
ttttctctccaacggactaattccaatttgctagcttatttttcccacaatagcaaactacttcttcatttcaaaataaattaaaagaggaatacaaagt |
1547450 |
T |
|
| Q |
306 |
aaattatgatataannnnnnnn--ggatattaatcatgaacggtgttgcctatgttagattatgtgcaatttcattcgtttatctattagtaaattctgc |
403 |
Q |
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| T |
1547449 |
aaattatgatataattttttttttggatattaatcatgaacggtgttgcctatgttagattatgtgcaatttcattcgtttatctattagtaaattctgc |
1547350 |
T |
|
| Q |
404 |
actatgatgagccctaaatcaaaatattccttcgagtgattcataaggtctgttactactactttatacaccacttcaacaattacattttccaactcat |
503 |
Q |
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| T |
1547349 |
actatgatgagccctaaatcaaaatattcctttgagtgattcataaggtctgtcactactactttatacaccacttcaacaattacattttccaactcat |
1547250 |
T |
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| Q |
504 |
ggtcaagagtccactagagcgccgagagtatggcacaagcctcgcattcaactgttggaagattacgaggaggagtac |
581 |
Q |
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| T |
1547249 |
ggtcaagagtccactagagcgccgagagtatggcacaagcctcgcattcaactgttggaagattacgaggaggagtac |
1547172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 170 - 286
Target Start/End: Complemental strand, 1543722 - 1543606
Alignment:
| Q |
170 |
cttaactccttttacttcatcaaaataacttaattacctccatgttttcac-tccaatggactaattccaatttgctagcttatttttcccacaatagca |
268 |
Q |
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| T |
1543722 |
cttaattccttttactgcatcaaaatagcataattacctccaggttttctcatcccactggctaatttcaatttgctagctttattttcc-acagtagca |
1543624 |
T |
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| Q |
269 |
aactacttcatttcaaaa |
286 |
Q |
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| T |
1543623 |
aactacttcatttcaaaa |
1543606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 334 - 559
Target Start/End: Complemental strand, 1543540 - 1543317
Alignment:
| Q |
334 |
taatcatgaacggtgttgcctatgttagattatgtgcaatttcattcgtttatctattagtaaattctgcactatgatgagccctaaatcaaa--atatt |
431 |
Q |
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||||||| || |||||||||| |||||||| |||| |||||||| |||||||| ||| ||||||||||| |||||| | ||||||||||| || || |
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| T |
1543540 |
taatcataaaaggtgttgcctgtgttagatcgtgtgagatttcattagtttatctcttaataaattctgcattatgataactcctaaatcaaaacatttt |
1543441 |
T |
|
| Q |
432 |
ccttcgagtgattcataaggtctgttactactactttatacaccacttcaacaattacattttccaactcatggtcaagagtccactagagcgccgagag |
531 |
Q |
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|||| ||| |||| |||| ||| | | | ||||| ||| ||| || | ||||||||| |||||||||| ||| ||| |||| |||| | | ||||| |
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| T |
1543440 |
cctt-gagagattgataacgtcgg---ccatcactttgtaccccattttgataattacattatccaactcatagtctagaatccattagaacactgagag |
1543345 |
T |
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| Q |
532 |
tatggcacaagcctcgcattcaactgtt |
559 |
Q |
| |
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|| |||||||||| ||||||||||||| |
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| T |
1543344 |
taacgcacaagccttgcattcaactgtt |
1543317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 1543822 - 1543773
Alignment:
| Q |
42 |
ttacacatttggtttgtttgttcgccaagtcaacatggcatgttcagttt |
91 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||| ||||| |
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| T |
1543822 |
ttacacatttggtttgtttgctcgccaagtcaacttggcatgtttagttt |
1543773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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