View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10858_high_13 (Length: 250)

Name: NF10858_high_13
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10858_high_13
NF10858_high_13
[»] chr1 (4 HSPs)
chr1 (1-241)||(18439578-18439818)
chr1 (1-241)||(18450436-18450676)
chr1 (1-111)||(18104179-18104289)
chr1 (2-96)||(42577052-42577146)
[»] chr5 (2 HSPs)
chr5 (1-96)||(113950-114045)
chr5 (49-94)||(23354945-23354990)
[»] chr2 (2 HSPs)
chr2 (1-96)||(4823796-4823892)
chr2 (50-96)||(23769131-23769177)
[»] chr3 (4 HSPs)
chr3 (20-96)||(21412389-21412466)
chr3 (41-96)||(20623070-20623125)
chr3 (1-96)||(1884154-1884249)
chr3 (130-162)||(45850758-45850790)
[»] chr7 (3 HSPs)
chr7 (42-96)||(4093948-4094002)
chr7 (20-96)||(23024129-23024206)
chr7 (11-96)||(4288582-4288667)
[»] chr8 (2 HSPs)
chr8 (16-109)||(5527837-5527931)
chr8 (41-79)||(23412989-23413027)
[»] chr4 (1 HSPs)
chr4 (118-162)||(2183363-2183407)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 18439578 - 18439818
Alignment:
Q  1 caaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaagtac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18439578 caaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcctgcaagcaattaatttaaaactaatgattgtttaccaaaagtac 18439677  T
Q  101 aagtaaacacttacatactttgttatctgtatccttgattttttgtgggttagcaacctgatgggattagagaaacaacacgcctatcttctcaaccaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18439678 aagtaaacacttacatactttgttatctgtatccttgattttttgtgggttagcaacctgatgggattagagaaacaacacgcctatcttctcaaccaaa 18439777  T
Q  201 aacaaaacccacatcatatcactcttctacatattctctgc 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18439778 aacaaaacccacatcatatcactcttctacatattctctgc 18439818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 18450436 - 18450676
Alignment:
Q  1 caaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaagtac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18450436 caaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcctgcaagcaattaatttaaaactaatgattgtttaccaaaagtac 18450535  T
Q  101 aagtaaacacttacatactttgttatctgtatccttgattttttgtgggttagcaacctgatgggattagagaaacaacacgcctatcttctcaaccaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18450536 aagtaaacacttacatactttgttatctgtatccttgattttttgtgggttagcaacctgatgggattagagaaacaacacgcctatcttctcaaccaaa 18450635  T
Q  201 aacaaaacccacatcatatcactcttctacatattctctgc 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18450636 aacaaaacccacatcatatcactcttctacatattctctgc 18450676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 18104179 - 18104289
Alignment:
Q  1 caaacttttatgagaaataattgcacaaatacgtcctaaaatttc-tagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaagta 99  Q
    ||||||||| ||||||| | |||||||| || ||||||  ||||  ||||||||||||||||| ||| |||||||||||| ||||||||||||||||  |    
T  18104179 caaacttttctgagaaaca-ttgcacaattatgtcctacgatttaatagtttgatcatgcaagtaataaatttaaaactagtgattgtttaccaaaaaca 18104277  T
Q  100 caagtaaacact 111  Q
    || |||||||||    
T  18104278 cacgtaaacact 18104289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 42577052 - 42577146
Alignment:
Q  2 aaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcatgcaagcaattaattt-aaaactaatgattgtttaccaaaa 96  Q
    |||| ||||| ||||||| ||||| ||||| |||||| | || |||||||||||||||||| ||  ||||| ||||||||||||||||||||||||    
T  42577052 aaacatttataagaaata-ttgcataaatatgtcctagatttactagtttgatcatgcaagtaacaaattttaaaactaatgattgtttaccaaaa 42577146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 113950 - 114045
Alignment:
Q  1 caaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaa 96  Q
    ||||||||| |||||||  |||||||||||| ||| ||  |||| || |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  113950 caaacttttttgagaaactattgcacaaatatgtcttatgatttttaatttgatcatgcaagcaattaatctaaaactagtgattgtttaccaaaa 114045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 23354990 - 23354945
Alignment:
Q  49 tttgatcatgcaagcaattaatttaaaactaatgattgtttaccaa 94  Q
    ||||||| ||||||||| |||||||||||||| | |||||||||||    
T  23354990 tttgatcttgcaagcaagtaatttaaaactaacgcttgtttaccaa 23354945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 4823796 - 4823892
Alignment:
Q  1 caaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcatgcaagcaattaattt--aaaactaatgattgtttaccaaaa 96  Q
    ||||||||| | ||||||||||||| ||||| |||||||||||||||| |||||||||||| |||||||| |  |||| || ||||||||||||||||    
T  4823796 caaacttttttaagaaataattgcataaatatgtcctaaaatttctag-ttgatcatgcaaacaattaatctaaaaaattagtgattgtttaccaaaa 4823892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 23769177 - 23769131
Alignment:
Q  50 ttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaa 96  Q
    |||||| |||||| ||||||||| |||| ||||||||||||||||||    
T  23769177 ttgatcttgcaagtaattaattttaaaccaatgattgtttaccaaaa 23769131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 21412466 - 21412389
Alignment:
Q  20 attgcacaaatacgtcctaaaattt-ctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaa 96  Q
    |||||||||||| ||||||| |||  |||||||||||||||||| |||||||||||||||| | ||||||||||||||    
T  21412466 attgcacaaatatgtcctaatattcactagtttgatcatgcaagtaattaatttaaaactagtaattgtttaccaaaa 21412389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 20623125 - 20623070
Alignment:
Q  41 atttctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaa 96  Q
    |||| |||||||||| | ||| |||||||||||||||||||| |||||||||||||    
T  20623125 atttttagtttgatcctacaaacaattaatttaaaactaatgtttgtttaccaaaa 20623070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 1884249 - 1884154
Alignment:
Q  1 caaacttttatgagaaataattgcacaaatacgtcctaaaattt-ctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaa 96  Q
    ||||| ||| ||||||||| ||||||||||| ||||||  |||| ||||||||||  |||||| ||  |||| ||||||| ||||||||||||||||    
T  1884249 caaacatttttgagaaata-ttgcacaaatatgtcctatgatttactagtttgatactgcaagtaacaaattgaaaactagtgattgtttaccaaaa 1884154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 45850790 - 45850758
Alignment:
Q  130 tatccttgattttttgtgggttagcaacctgat 162  Q
    |||||||||||||| ||||||||||||||||||    
T  45850790 tatccttgatttttggtgggttagcaacctgat 45850758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 4093948 - 4094002
Alignment:
Q  42 tttctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaa 96  Q
    ||||||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  4093948 tttctagtttgatcatgcaagtaattaattcaaaactagcgattgtttaccaaaa 4094002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 23024129 - 23024206
Alignment:
Q  20 attgcacaaatacgtcctaaaattt-ctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaa 96  Q
    |||||||||||| ||||||  |||| |||||||||||| ||| | ||| |||||||||||| |||||| |||||||||    
T  23024129 attgcacaaatatgtcctaggatttactagtttgatcaagcacgtaataaatttaaaactagtgattgcttaccaaaa 23024206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 4288582 - 4288667
Alignment:
Q  11 tgagaaataattgcacaaatacgtcctaaaattt-ctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaa 96  Q
    ||||||||| ||||||||||| ||| ||  |||| ||||||| ||| ||  || ||| |||||||||||||||||||||||||||||    
T  4288582 tgagaaata-ttgcacaaatatgtcataggatttactagtttaatcctgtgagtaataaatttaaaactaatgattgtttaccaaaa 4288667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 5527837 - 5527931
Alignment:
Q  16 aataattgcacaaatacgtcctaaaattt-ctagtttgatcatgcaagcaattaatttaaaactaatgattgtttaccaaaagtacaagtaaaca 109  Q
    |||||||||||||||| ||| ||   ||| ||||||||||| |||||| ||||| ||||||||||  ||||||||| ||||| |||  |||||||    
T  5527837 aataattgcacaaatatgtcataggttttactagtttgatcttgcaagtaattagtttaaaactagcgattgtttagcaaaattactggtaaaca 5527931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 23412989 - 23413027
Alignment:
Q  41 atttctagtttgatcatgcaagcaattaatttaaaacta 79  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  23412989 atttctagtttgatcctgcaagcaattaatctaaaacta 23413027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 2183363 - 2183407
Alignment:
Q  118 ctttgttatctgtatccttgattttttgtgggttagcaacctgat 162  Q
    ||||||||| | ||||||| |||||| ||||||||||||||||||    
T  2183363 ctttgttatttttatccttaatttttggtgggttagcaacctgat 2183407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University