View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_high_19 (Length: 233)
Name: NF10858_high_19
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_high_19 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 142273 - 142494
Alignment:
| Q |
1 |
gtgttactatgagttctgaaactataccacaaattcagcacataatcaacattccagaaatcattgaacctatgttacatgaaaaatgttgcatttacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
142273 |
gtgttactatgagttctgaaactataccacaaattcagcacataatcaacattccagaaatcattgaacctatgttacatgaaaaatgttgcatttacaa |
142372 |
T |
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| Q |
101 |
ggttcctcaccatgttctgaagttgaatgaagatgcttatacaccacagtttatctcaataggtcctttttacagtcaaaatccacaactaaatcaagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
142373 |
ggttcctcaccatgttctgaagttgaatgaagatgcttatacaccaaagtttatctcaataggtccttttcacagtcaaaatccacaactaaatcaagag |
142472 |
T |
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| Q |
201 |
aaacagaaacaaaggtattttc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
142473 |
aaacagaaacaaaggtattttc |
142494 |
T |
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Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 33 - 214
Target Start/End: Complemental strand, 45961367 - 45961186
Alignment:
| Q |
33 |
attcagcacataatcaacattccagaaatcattgaacctatgttacatgaaaaatgttgcatttacaaggttcctcaccatgttctgaagttgaatgaag |
132 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45961367 |
attcagcacataatcatcattccagaaagcattgaacctatgttacatgaaaaatgttgcatttacaaggttcctcaccatcttctgaagttgaatgaag |
45961268 |
T |
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| Q |
133 |
atgcttatacaccacagtttatctcaataggtcctttttacagtcaaaatccacaactaaatcaagagaaacagaaacaaag |
214 |
Q |
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| T |
45961267 |
atgcttatacaccaaagtttatctcaataggtccttttcacagtcataatccagaagtaaatcaagagaaacaaaaacaaag |
45961186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 292471 - 292667
Alignment:
| Q |
26 |
accacaaattcagcacataatcaacattccagaaatcattgaacctatgttacatgaaaaatgttgcatttacaaggttcctcaccatgttctgaagttg |
125 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
292471 |
accacagattcagcacataatcaacattccagagatcattgaacctatgttacatgaaaaatgttgcatttacaaggttcctcaccatcttctgaagttg |
292570 |
T |
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| Q |
126 |
aatgaagatgcttatacaccacagtttatctcaataggtcctttttacagtcaaaatccacaactaaatcaagagaaacagaaacaaaggtattttc |
222 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||| || ||||||| || || ||||||||||||||||||||||||||| ||| |||| |
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| T |
292571 |
aatgaagatgcttacacaccaaagtttatctcaataggtcctcttcacagtcataaccctgaactaaatcaagagaaacagaaacaaaagtactttc |
292667 |
T |
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