View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_high_20 (Length: 226)
Name: NF10858_high_20
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_high_20 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 1548028 - 1547813
Alignment:
| Q |
1 |
taagcaaggaaacaaacaaatttcaaagaaaaagtagttgatggttgataccccgatctcggtattgccaaagagggtgtcaaacaacttccgaaaagct |
100 |
Q |
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| T |
1548028 |
taagcaaggaaacaaacatatttcaaagaaaaagtagttgatggttgataccccgatctcggtattgccaaagagggtgtcaaacaacttccgaaaagct |
1547929 |
T |
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| Q |
101 |
tgaccaataataaccacttgaatactttcaatttcaat--tctagtttgcaatttgtgctgagaatcagaaaaagggagatagatatagatatagattga |
198 |
Q |
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| T |
1547928 |
tgacccataataaccacttgaaagctttcaatttcaattctctagtttgcaatttgtgctgagaatcagaaaaag------------agatatagattga |
1547841 |
T |
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| Q |
199 |
agtgtggactttgaattataacaaacaa |
226 |
Q |
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| T |
1547840 |
agtgtggactttgaattataacaaacaa |
1547813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 1544167 - 1544002
Alignment:
| Q |
1 |
taagcaaggaaacaaacaaatttcaaagaaaaagtagttgatggttgataccccgatctcggtattgccaaagagggtgtcaaacaacttccgaaaagct |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1544167 |
taagcaaggaaacaaacatatttcaaagaaaaagtagttgatggttgataccctgatctcggtattgccaaagagggtgtcaaacagcttccgaaaagct |
1544068 |
T |
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| Q |
101 |
tgaccaataataaccacttgaatactttcaatttcaattctagtttgcaatttgtgctgagaatca |
166 |
Q |
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| T |
1544067 |
tgacccataataaccacttgaaagctttcaatttcaatcctagtttgcagtttgtgctgagaatca |
1544002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 1540191 - 1540151
Alignment:
| Q |
65 |
ttgccaaagagggtgtcaaacaacttccgaaaagcttgacc |
105 |
Q |
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| T |
1540191 |
ttgccaaagaatgtgtcaaacaacttccgaaaaacttgacc |
1540151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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