View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_high_23 (Length: 218)
Name: NF10858_high_23
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 45367144 - 45367335
Alignment:
| Q |
14 |
agaagtgaaaaagagttgaacctttgatttaaacataacaaggccttcttgacagtaagcacnnnnnnn--ttatactttcgaagcaattctagagtgaa |
111 |
Q |
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| T |
45367144 |
agaagtgaaaaagagttgaacctttgatttaaacataacaaggccttcttgacagtaagcacaaaaaaaaattatactttcgaagcaattctagagtgaa |
45367243 |
T |
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| Q |
112 |
cccatttatgttgatgagcttcataggttttggtttgaatgaatctgtaaagaaaccaagcaagaagtgttaaacaaaatagggagagaaag |
203 |
Q |
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| T |
45367244 |
cccatttatgttgatgagcttcataggttttggtttgaatgaatctgtaaagaaaccaagcaagaagtgttaaacaaaatagggagagaaag |
45367335 |
T |
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Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 432132 - 432229
Alignment:
| Q |
106 |
agtgaacccatttatgttgatgagcttcataggttttggtttgaatgaatctgtaaagaaaccaagcaagaagtgttaaacaaaatagggagagaaag |
203 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
432132 |
agtggacccatttatgttgatgagcttcatagcttttggtttgaatgaatctgtaaagaaaccaagcaagaagtgctaaacaaaatagggagagaaag |
432229 |
T |
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