View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10858_high_3 (Length: 432)
Name: NF10858_high_3
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 24067177 - 24066768
Alignment:
| Q |
17 |
agttatatcacatattaattaccatttcgtacctttgcatgacaaagttgaacatgtgatccagcttcatcaatcaaatcaattgccttatcaggtaaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24067177 |
agttatatcacatattaattaccatttcgcacctttgcatgacaaagttgaacatgtgatccagcttcatcaatcaaatcaattgccttatcaggtaaga |
24067078 |
T |
|
| Q |
117 |
aacgctcgctgaaatttactcgcgcagaaacatatgtgaaaaactagagactcatttctgttataatatatgttgtagaattggcgctaataataatttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24067077 |
aacgctcgctgaaatttactcgcgcagaaacatatgtgaaaaactagagactcatttctgttataatatatgttgtagaattggcgctaataataatttt |
24066978 |
T |
|
| Q |
217 |
agtaacacatttttaccttacatattgctgagacaaatttgcagctgcaacaagagcttcatctgtgtaatgaagtttataatgcgactcatatgttccg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24066977 |
agtaacacatttttaccttacatattgctgagacaaatttgcagctgcaacaagagcttcatctgtgtaatgaagtttataatgcgactcatatgttccg |
24066878 |
T |
|
| Q |
317 |
cggaggcctttaagaatttctatggtttcttcaacagatggttcaaccactttaactggttgaaataatctttttaaggttgtatcattttccatgtgca |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24066877 |
cggaggcctttaagaatttctatggtttcttcaacagatggttcaaccactttaactggttgaaatattctttttaaggttgtatcattttccatgtgca |
24066778 |
T |
|
| Q |
417 |
ttctgtgctc |
426 |
Q |
| |
|
|||||||||| |
|
|
| T |
24066777 |
ttctgtgctc |
24066768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University