View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_high_5 (Length: 427)
Name: NF10858_high_5
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 26583529 - 26583920
Alignment:
| Q |
19 |
ttcataacgtggtatcatccaagggaaagtgctaaaagtagatttagtgaatctaatccaatccaaatagtactaaaaccgagttatccgattcaatcat |
118 |
Q |
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| T |
26583529 |
ttcataacgtggtatcatccaagggaaagtgctaaaagtagatttagtgaatctaatccaatccaaatagtactaaaactgaattatccggttcaatcat |
26583628 |
T |
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| Q |
119 |
ttgttatagttagttcatgtttggtataatgatgagtttgacaaaatcacagcaaaatcattatgtttcaccgtgattttgataaactcaccgtgatacc |
218 |
Q |
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| T |
26583629 |
gtgttatagttagttcatgtttggtattatggtgagtttgacaaa-----------atcattatgtctcaccgtgattttgataaactcaccgtgatacc |
26583717 |
T |
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| Q |
219 |
aaacatgtacttacaaaatcatttcatttaacggtggaagcaaatactaaaaattgtgctagttattttgttatgtcatctagaatattaaagtagtttg |
318 |
Q |
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| T |
26583718 |
aaacatgtacttacaaaatcatttcatttaacggtggaagcaaatactaaaaattgtgctagttattttgttatgtcatctagaatattaaagtagtttg |
26583817 |
T |
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| Q |
319 |
taggctggc----ttgaaataaactctatttgtactctctaaacatttcttacgataatatttggtggtttctcaaaacagctcttacaatggctaccct |
414 |
Q |
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| T |
26583818 |
taggctggctaatttgaaataaactctatttgtactctctaaacatttcttacgataatatttggtggtttctcaaaacagctcttacaatggctaccct |
26583917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 30506364 - 30506328
Alignment:
| Q |
134 |
catgtttggtataatgatgagtttgacaaaatcacag |
170 |
Q |
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| T |
30506364 |
catgtttggtattatgatgagttcgacaaaatcacag |
30506328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 32965849 - 32965800
Alignment:
| Q |
180 |
tatgtttcaccgtgattttgataaactcaccgtgataccaaacatgtact |
229 |
Q |
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| T |
32965849 |
tatgtctcaccgtgatttcgataaactcaccatgataccaaacatgtact |
32965800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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