View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_10 (Length: 359)
Name: NF10858_low_10
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_10 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 22 - 343
Target Start/End: Complemental strand, 14767413 - 14767092
Alignment:
| Q |
22 |
gaagaagttcgcataatctgcattgtcaatgctcgtggcaagtttaatccaccgttaccaaacggttactacggtaatgcttttgcatttcctgtcgcgg |
121 |
Q |
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| T |
14767413 |
gaagaagttcgcataatctgcattgtcaatgctcgtggcaagtttaatccaccgttgccaaacggttactacggtaatgcttttgcatttcctgtcgcgg |
14767314 |
T |
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| Q |
122 |
ttacaaccgccgggaaactaatggaaaatccattagggtatgcactagagttagttaaaaaagctaaatctgatgtaactcaagaatacatgcattcagt |
221 |
Q |
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| T |
14767313 |
ttacaaccgcggggaaactaatggaaaatccattagggtatgcactagagttagttaaaaaagctaaatctgatgtaactcaagaatacatgcattcagt |
14767214 |
T |
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| Q |
222 |
tgcagatttaatggttatcaagggtagaccacattttactgtggttagaagttatcttgtgtctgatgtgacacgtgccggattcggagatgttgaattt |
321 |
Q |
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| T |
14767213 |
tgcagatttaatggttatcaagggtcgaccacattttactgtggttagaagttatcttgtgtctgatgtgacacgtgccggattcggagatgttgaattt |
14767114 |
T |
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| Q |
322 |
ggttggggaaaagctatatatg |
343 |
Q |
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| T |
14767113 |
ggttggggaaaagctgtatatg |
14767092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 336
Target Start/End: Original strand, 14759446 - 14759703
Alignment:
| Q |
79 |
ccaaacggttactacggtaatgcttttgcatttcctgtcgcggttacaaccgccgggaaactaatggaaaatccattagggtatgcactagagttagtta |
178 |
Q |
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| T |
14759446 |
ccaaaaggttattatggtaacgctatagcgtttcccgttgcggttacaactgcaggaaaacttattgaaaatccactggagtatgcattgaatttagtta |
14759545 |
T |
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| Q |
179 |
aaaaagctaaatctgatgtaactcaagaatacatgcattcagttgcagatttaatggttatcaagggtagaccacattttactgtggttagaagttatct |
278 |
Q |
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| T |
14759546 |
agaaagcaaaagctaatgtcaacaaagagtatatgcattcagtggcagatttaatggttatcaagggtcgtcctcctttaactactgctggattatattt |
14759645 |
T |
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| Q |
279 |
tgtgtctgatgtgacacgtgccggattcggagatgttgaatttggttggggaaaagct |
336 |
Q |
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| T |
14759646 |
agtgtctgatattacacgtgctggacttggagatgttgaatttggttgggggaaagct |
14759703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 336
Target Start/End: Complemental strand, 14878288 - 14878037
Alignment:
| Q |
85 |
ggttactacggtaatgcttttgcatttcctgtcgcggttacaaccgccgggaaactaatggaaaatccattagggtatgcactagagttagttaaaaaag |
184 |
Q |
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| T |
14878288 |
ggttactatggtaacgctatagtatttcccgttgcggttacaactgcaggaaaactaattgaaaatccgttggcttatgcattgaatttagttaagaaag |
14878189 |
T |
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| Q |
185 |
ctaaatctgatgtaactcaagaatacatgcattcagttgcagatttaatggttatcaagggtagaccacattttactgtggttagaagttatcttgtgtc |
284 |
Q |
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| T |
14878188 |
caaaagctagtgtcaacaaagagtatatgcattcagtggcagatttaatggttatcaagggtcgtcctcctttaactactgcaggattgtatctagtgtc |
14878089 |
T |
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| Q |
285 |
tgatgtgacacgtgccggattcggagatgttgaatttggttggggaaaagct |
336 |
Q |
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| T |
14878088 |
tgatgttacacgagctggatttcgagatgttgattttggttgggggaaagct |
14878037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 296
Target Start/End: Complemental strand, 14786346 - 14786222
Alignment:
| Q |
172 |
ttagttaaaaaagctaaatctgatgtaactcaagaatacatgcattcagttgcagatttaatggttatcaagggtagaccacattttactgtggttagaa |
271 |
Q |
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| T |
14786346 |
ttagttaagaaagcaaaagctaatgtcacccaagagtacatgcattcgattgcggatttaatggttatcaagggtcgacctcactttaatgtagtaaaat |
14786247 |
T |
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| Q |
272 |
gttatcttgtgtctgatgtgacacg |
296 |
Q |
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| T |
14786246 |
cctatcttgtttctgacgtgacacg |
14786222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 14873457 - 14873394
Alignment:
| Q |
65 |
ttaatccaccgttaccaaacggttactacggtaatgcttttgcatttcctgtcgcggttacaac |
128 |
Q |
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| T |
14873457 |
ttaacccacccttaccaaacggtaactacggtaacagttttgcatttcctgctgcggttacaac |
14873394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 336
Target Start/End: Complemental strand, 84297 - 84097
Alignment:
| Q |
136 |
aaactaatggaaaatccattagggtatgcactagagttagttaaaaaagctaaatctgatgtaactcaagaatacatgcattcagttgcagatttaatgg |
235 |
Q |
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|||||||| ||||| ||||| ||||||||| || |||||||| ||||| ||| || |||| || |||| ||||||||||| | ||||||||| ||| |
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| T |
84297 |
aaactaattgaaaacccattgacgtatgcactggatttagttaagaaagcaaaagctaatgtcaccgaagagtacatgcattccatggcagatttattgg |
84198 |
T |
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| Q |
236 |
ttatcaagggtagaccacattttactgtggttagaagttatcttgtgtctgatgtgacacgtgccggattcggagatgttgaatttggttggggaaaagc |
335 |
Q |
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| T |
84197 |
taatcaagggtagacctcattttactacagcgaatgcttgtttagtgtctgatgttacacgtgctggatttagagatgttgattttggttgggggaaagc |
84098 |
T |
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| Q |
336 |
t |
336 |
Q |
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| T |
84097 |
t |
84097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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