View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_11 (Length: 357)
Name: NF10858_low_11
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_11 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 357
Target Start/End: Original strand, 36208866 - 36209217
Alignment:
| Q |
6 |
aaaatcaatgtttctataattatcctcaagtaattcacgtcttgagtcccaataaggttttgcatcaaaagaatacaacttatcatgtaaagcaccaact |
105 |
Q |
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| T |
36208866 |
aaaatcaatgtttctataattatcctcaagtaattcacgtcttgagtcccaataaggttttgcatcaaacgaatacaacttatcatgtaaagcaccaact |
36208965 |
T |
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| Q |
106 |
gcatcattaactcttggtgaagtgtaacaccaaatagctacgacaccatgaggtttcttgagaacccaattgacttgtttgtagaaggttggtaggtcaa |
205 |
Q |
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| T |
36208966 |
gcatcattaactcttggtgaagtgtaacaccagatagctaagacaccattaggtttcttgagaacccaattaacttgtttgtagaaggttgagaggtcaa |
36209065 |
T |
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| Q |
206 |
gccagtgaagagcttgagcaatggtcacaaggtcgatagttccttgaggtgaaaccatctgttcaagatcagtaatggacatggttgatggggtgtgttg |
305 |
Q |
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| T |
36209066 |
gccagtgaagggcttgagcaatggtcacaaggtctatggttccttgaggtgacaccatttgttcaagctcagtcatggacatggttgatggggtgtgttg |
36209165 |
T |
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| Q |
306 |
gtatcgtacattagggagcttggttgcgaattcaagttgtttctcactagca |
357 |
Q |
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| T |
36209166 |
gtatcgtacattaggaagcttggttgcaaattcaagttgtttctcactagca |
36209217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 36205794 - 36206061
Alignment:
| Q |
21 |
ataattatcctcaagtaattcacgtctt-gagtcccaataaggttttgcatcaaaagaatacaacttatcatgtaaagcaccaactgcatcattaactct |
119 |
Q |
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| T |
36205794 |
ataattttcctcaactaattcacgtctttgggtcccaatgaggttttgcatcaaaagaatataccttatcatgcaaagcatcaactgcatcattaactct |
36205893 |
T |
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| Q |
120 |
tggtgaagtgtaacaccaaatagctacgacaccatgaggtttcttgagaacccaattgacttgtttgtagaaggttggtaggtcaagccagtgaagagct |
219 |
Q |
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| T |
36205894 |
tggtgaattgtaacaccaagtagcaatgataccatgaggtttcttgaggacccaattgacttgcttgtagaaggttgagaggtcaaaccagtgaagagct |
36205993 |
T |
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| Q |
220 |
tgagcaatggtcacaaggtcgatagttccttgaggtgaaaccatctgttcaagatcagtaatggacat |
287 |
Q |
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| T |
36205994 |
tgagcaatggtgacaaggtctatggttccttgagatgacaccatttgttcaagctcagccatggacat |
36206061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 129 - 346
Target Start/End: Complemental strand, 35399788 - 35399571
Alignment:
| Q |
129 |
gtaacaccaaatagctacgacaccatgaggtttcttgagaacccaattgacttgtttgtagaaggttggtaggtcaagccagtgaagagcttgagcaatg |
228 |
Q |
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| T |
35399788 |
gtaacaccaagcagcaatgactccatgaggtttcttgagtacccatttgacttgttgatagaaatttgggaggtcaaaccaatgaaggccttgagcaata |
35399689 |
T |
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| Q |
229 |
gtcacaaggtcgatagttccttgaggtgaaaccatctgttcaagatcagtaatggacatggttgatggggtgtgttggtatcgtacattagggagcttgg |
328 |
Q |
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| T |
35399688 |
gtcacaaggtctatggttccttgtggtgttacaatttgttcaagctcgggaatggacattgttgaaggggtgtgtttgtattgcacattagggagcttgg |
35399589 |
T |
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| Q |
329 |
ttgcgaattcaagttgtt |
346 |
Q |
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| T |
35399588 |
ttgcaaattcaagttgtt |
35399571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 6 - 346
Target Start/End: Complemental strand, 35404840 - 35404499
Alignment:
| Q |
6 |
aaaatcaatgtttctataattatcctcaagtaattcacgtcttgagtcccaataaggttttgcatcaaaagaatacaacttatcatgtaaagcaccaact |
105 |
Q |
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| T |
35404840 |
aaaatcaatgcttctataattgtcctcaactaatttacacgctgaatcccaataaggttttgaatcaataaaatagaattgatcaacgacagtgtctact |
35404741 |
T |
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| Q |
106 |
gcatcattaactcttggtgaagtgtaacaccaaatagctacgacaccatgaggtttcttgagaacccaattgacttgtttgtagaaggttggtaggtcaa |
205 |
Q |
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| T |
35404740 |
tcatcactaattcttggcaaagagtaacaccaagcagcaatgactccatgaggttttttgagtacccattttacttgttgatagaaatttgggaagtcaa |
35404641 |
T |
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| Q |
206 |
gccagtgaagagcttgagcaatggtcacaaggtcgatagttccttgaggtgaaaccatctgttcaagatcagtaatggacatggttg-atggggtgtgtt |
304 |
Q |
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| T |
35404640 |
accaatgaagaccttgagcaatagtcacaaggtctatggttccttgtggtgttacaatttgttcaagctcgggaatggacattgttgaagggggtgtgtt |
35404541 |
T |
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| Q |
305 |
ggtatcgtacattagggagcttggttgcgaattcaagttgtt |
346 |
Q |
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| T |
35404540 |
tgtattgcacattagggagtttggttgcaaattcaagttgtt |
35404499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 36206181 - 36206255
Alignment:
| Q |
283 |
gacatggttgatggggtgtgttggtatcgtacattagggagcttggttgcgaattcaagttgtttctcactagca |
357 |
Q |
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| T |
36206181 |
gacatggttgatggggtgtgttggtatcgcacattatgaagcaaggttgcaaattcaagttgtttctcactagca |
36206255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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