View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10858_low_12 (Length: 346)
Name: NF10858_low_12
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 21590265 - 21590602
Alignment:
| Q |
1 |
caactttacattgattagtttccactcctccacctaaaccccatcttccactgtcttcttccccatgttcatttctaccatgtttcttcacaaagttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21590265 |
caactttacattgattagtttccactcctccacctaaaccccatcttccactgtcttcttccccatgttcatttctaccatgtttcttcacaaagttcaa |
21590364 |
T |
|
| Q |
101 |
atctttcacatactcacattcatctccaacttccacacccttttgggccactccataatcctctaaaactctcaactcaacccttttagccttaaaaggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
21590365 |
atctttcacatactcacattcatctccaacttccacacccttttgagccactccataatcctctaaaactctcaactcaacccttttagccttaaaaagt |
21590464 |
T |
|
| Q |
201 |
aacaaaaaactatgggaagtaaatggagaaaagtgaaactagcccttggtttaaattcttgtgttcacattccacaacctttagatgattcctctgccgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21590465 |
aacaaaaaactatgggaagtaaatggagaaaagtgaaactagcccttggtttaaattcttgtgttcacattccacaacctttagatgattcctccgccgc |
21590564 |
T |
|
| Q |
301 |
aagactctccggcgccacctcttccgccgcttcttctc |
338 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21590565 |
aagattctccggcgccacctcttccgccgcttcttctc |
21590602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University