View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_14 (Length: 319)
Name: NF10858_low_14
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 1092964 - 1092677
Alignment:
| Q |
19 |
actccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtggaattagtggtttcctctaattggtttgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1092964 |
actccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtggaattagtggtttcctctaattggtttgt |
1092865 |
T |
|
| Q |
119 |
gtttttcaccaccatgttgagagggagaaacaacaccagaatagaagtgtattatgactctaacaaagcatggaattactacctatagaattggacagga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1092864 |
gtttttcaccaccatgttgagagggagaaacaacaccagaatggaagtgtattatgactctaacaaagcatggaattactacctatagaattggacagga |
1092765 |
T |
|
| Q |
219 |
gagaacattaaaatagactgggcaaagaagaccaatgtattaaaattacacaaatagtaaagaaataaatgtgattgttttgtctctg |
306 |
Q |
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| T |
1092764 |
gagaacattaaaatagactgggcaaagaagaccaatgtattaaaattacacaaatagtaaagaaataaatgtgattgttttgtctctg |
1092677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 25225124 - 25225169
Alignment:
| Q |
48 |
gaatcatcaaaagctttcacttcagcttctctatcataagtggaat |
93 |
Q |
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| T |
25225124 |
gaatcatcaaaagctttcacttcaacatttctatcatatgtggaat |
25225169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 49465481 - 49465622
Alignment:
| Q |
19 |
actccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtggaattagtggtttcctctaattggtttgt |
118 |
Q |
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|||| |||||||| ||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| ||||| |
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| T |
49465481 |
actcaaccaaaccattgacgcctgctcgtgaatcatcaaaagctttcacttcagcttttctatcataagtggaatcagtggcttcctctaattgatttgt |
49465580 |
T |
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| Q |
119 |
gtttttcaccaccatgttgagagggagaaacaacaccagaatag |
162 |
Q |
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|||||| ||||||||||||||| | ||||||| |||||||||| |
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| T |
49465581 |
gttttttaccaccatgttgagaag--gaaacaaaaccagaatag |
49465622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 8349019 - 8348970
Alignment:
| Q |
44 |
ttttgaatcatcaaaagctttcacttcagcttctctatcataagtggaat |
93 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||| ||||||| |
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| T |
8349019 |
ttttgaatcatcaaaagctttcacttcagcatttctatcatatgtggaat |
8348970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 29462698 - 29462555
Alignment:
| Q |
21 |
tccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtggaattagtggtttcctctaattggtttgtgt |
120 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| ||| | ||| ||||| ||||||||||| || |
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| T |
29462698 |
tccaccaaacctttgacaccaacttttgaatcatcaaaagctttaacttcggcttctctatcataagtgaaatcactggattcctttaattggtttgagt |
29462599 |
T |
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| Q |
121 |
ttttcaccaccatgttgagagggagaaacaacaccagaatagaagt |
166 |
Q |
| |
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||| |||||||| |||| ||| |||||||||||||||| |||| |
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| T |
29462598 |
tttctaccaccatattgatagg--caaacaacaccagaataaaagt |
29462555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 19890311 - 19890171
Alignment:
| Q |
20 |
ctccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtggaattagtggtttcctctaattggtttgtg |
119 |
Q |
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||||||||||||| ||||||| ||||||||||||||||| ||||||||| | || ||||||||||||||||||||| | ||||||||| || |||||| |
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| T |
19890311 |
ctccaccaaacctctgacaccagcttttgaatcatcaaaatttttcacttctgtttttctatcataagtggaattagtagattcctctaactgatttgtg |
19890212 |
T |
|
| Q |
120 |
tttttcaccaccatgttgagagggagaaacaacaccagaatag |
162 |
Q |
| |
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||||| |||||||| |||||||| ||||||||||| ||||| |
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| T |
19890211 |
ttttttaccaccatattgagagg--aaaacaacaccaaaatag |
19890171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 19844455 - 19844333
Alignment:
| Q |
19 |
actccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtggaattagtggtttcctctaattggtttgt |
118 |
Q |
| |
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|||||||||||||| | ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || |||| |||||||| |
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| T |
19844455 |
actccaccaaacctctcacaccagcttttgaatcatcaaaagctttcacttcattgtatctatcataagtggaattagtggatttttctacttggtttga |
19844356 |
T |
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| Q |
119 |
gtttttcaccaccatgttgagag |
141 |
Q |
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|||||| |||||||| ||||||| |
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| T |
19844355 |
gttttttaccaccatattgagag |
19844333 |
T |
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