View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_15 (Length: 311)
Name: NF10858_low_15
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 293
Target Start/End: Original strand, 36367246 - 36367529
Alignment:
| Q |
10 |
aagaataaaagagagtttagggaatgatttctaatagcttcttgagagttcctgcttatatttctgtgaaggctcctgtagtggctgatcaaattagtca |
109 |
Q |
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| T |
36367246 |
aagaataaaagagagtttagggaatgatttctaatagcttcttgagagttcctgcttatatttctgtgacggctcctgtagtggctgatcaaattagaca |
36367345 |
T |
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| Q |
110 |
ggttgttgttactttagaagagtttcaatttgttttgaaacattctacagatggtagcttataaggaaagcatgtttacttgcatctcaagctacatgtt |
209 |
Q |
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| T |
36367346 |
ggttgttgttactttagaagagtttcaatttgttttcaaacattctacagatggtagcttataaggaaagcatgtttacttgcatctcaagctacatgtt |
36367445 |
T |
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| Q |
210 |
aatctagtaaattggtctaagaagatttggagcagcttcatccctccatcacattccttgtgatgaaaatctttggtctagggg |
293 |
Q |
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| T |
36367446 |
aatctagtaaattggtctaagaagatttggagcagcttcatccctccatcacattccttgtgatgaaaatctttggtctagggg |
36367529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 30 - 237
Target Start/End: Original strand, 36372264 - 36372482
Alignment:
| Q |
30 |
ggaatgatttctaatagcttcttgagagttcctgcttatatttctgtgaaggctcctgtagtggctgatcaaattagtcaggttgttgttactttagaag |
129 |
Q |
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| T |
36372264 |
ggaatgatttctaatggcatcatgagaattcttgctaatatttctgagaaggctcctgtagtgcctgatcaaattagacaagttgttattactttagaag |
36372363 |
T |
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| Q |
130 |
agtt------tcaatttgttttgaaacattctacag---atggtagctt--ataaggaaagcatgtttacttgcatctcaagctacatgttaatctagta |
218 |
Q |
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| T |
36372364 |
agtttcatggtcaatttgtttggaaacattctacagaaaatagtagcttaaatcagtaaagcatgcttacttgcatctcaagccacatgttaatctagta |
36372463 |
T |
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| Q |
219 |
aattggtctaagaagattt |
237 |
Q |
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| T |
36372464 |
aattgggctaagaagattt |
36372482 |
T |
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