View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_16 (Length: 287)
Name: NF10858_low_16
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 44736149 - 44736413
Alignment:
| Q |
21 |
catataacctttaagatggacagaagaacctttgatgagccagcaatataactaaattannnnnnncatgaaatgaaatttgcgtacatcattcttagaa |
120 |
Q |
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| T |
44736149 |
catataaccagtaagatggactgaggaacctttgatgagccagcaatataactaaattatttttttcatgaaatgaaatttgcttacatcattcttagaa |
44736248 |
T |
|
| Q |
121 |
actaaattggatattgcagtttttctcaaagattaaaacgactcatcactctttaagtgtttttatggctcaattcgtaattttgaggttattgttactt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44736249 |
actaaattggatattgcagtttttctcaaagattaaaacgactcatcactctttaattgtttttatggctcaattcgtaattttgaggttattgttactt |
44736348 |
T |
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| Q |
221 |
caacaannnnnnnaacactcgtatgattaaaaaagtcttctttaataactgttcttctctctcga |
285 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
44736349 |
caacaatttttttaacactcgtatgattaaaaaagacttctttaataactgttcttttctctcga |
44736413 |
T |
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