View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_17 (Length: 266)
Name: NF10858_low_17
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_17 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 18439475 - 18439236
Alignment:
| Q |
12 |
atgaaagtaaacaacttaaaaagaaaagcatttttatagcataaataaagattgatacatcaaatcatatataaattctcttgttactcttttctcgttt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
18439475 |
atgaaagtaaacaacttaaaaagaaaagcatttttatagcataaataaagattgatacatcaaatcatatacacattctcttgttactcttttctcgttt |
18439376 |
T |
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| Q |
112 |
taacttgaatatttttagctagaggattatgtatactgatttgtgacccctattttcctatacaaaactactatatatattattattaagtaactgaaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18439375 |
taacttgaatatttttagctagaggattatgtattttgatttgtgacccctattttcctatacaaaactactatatatactattattaagtaactgaaaa |
18439276 |
T |
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| Q |
212 |
taacagtcacaaactaaatgccttcgacacatgttttgat |
251 |
Q |
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| T |
18439275 |
taacagtcacaaactaaatgccttcgacacatattttgat |
18439236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 18450333 - 18450094
Alignment:
| Q |
12 |
atgaaagtaaacaacttaaaaagaaaagcatttttatagcataaataaagattgatacatcaaatcatatataaattctcttgttactcttttctcgttt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
18450333 |
atgaaagtaaacaacttaaaaagaaaagcatttttatagcataaataaagattgatacatcaaatcatatacacattctcttgttactcttttctcgttt |
18450234 |
T |
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| Q |
112 |
taacttgaatatttttagctagaggattatgtatactgatttgtgacccctattttcctatacaaaactactatatatattattattaagtaactgaaaa |
211 |
Q |
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| T |
18450233 |
taacttgaatatttttagctagaggattatgtattttgatttgtgacccctattttcctatacaaaactactatatatactattattaagtaactgaaaa |
18450134 |
T |
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| Q |
212 |
taacagtcacaaactaaatgccttcgacacatgttttgat |
251 |
Q |
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| T |
18450133 |
taacagtcacaaactaaatgccttcgacacatattttgat |
18450094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 18455282 - 18455187
Alignment:
| Q |
156 |
gacccctattttcctatacaaaactactatatatattattattaagtaactgaaaataacagtcacaaactaaatgccttcgacacatgttttgat |
251 |
Q |
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| T |
18455282 |
gacccctattttcctatacaaaactactatatatactattattaagtaactgaaaataacagtcacaaactaaatgccttcgacacatattttgat |
18455187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 23739509 - 23739558
Alignment:
| Q |
202 |
taactgaaaataacagtcacaaactaaatgccttcgacacatgttttgat |
251 |
Q |
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| T |
23739509 |
taactgaaaataaaagtcacaaaataaatgccttcgacacatgtcttgat |
23739558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 113659 - 113610
Alignment:
| Q |
202 |
taactgaaaataacagtcacaaactaaatgccttcgacacatgttttgat |
251 |
Q |
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| T |
113659 |
taactgaaaatgacggtcacaaactaaatgctttcgatacatgtcttgat |
113610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 8784 - 8685
Alignment:
| Q |
8 |
agagatgaaagtaaa-caacttaaaaagaaaagcatttttatagcataaataaagattgatacatcaaatcatatataaattctcttgttactcttttct |
106 |
Q |
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| T |
8784 |
agagatgaaagtaaaacaaattaaaa-gaaaagcattatgattgcataaatgtaaactggtacattaaatcatacatacattttcttgttactcttttct |
8686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 56367854 - 56367758
Alignment:
| Q |
70 |
atcaaatcatatataaattctcttgttactcttttctcgttttaacttgaatatttttag-ctagaggattatgtatactgatttgtgacccctattt |
166 |
Q |
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| T |
56367854 |
atcaaatcacacatacattatctcgttactcttttcttgttgtaacttggatactttgagtataaaggattatgtat-ttgatttgtgacccctattt |
56367758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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