View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10858_low_19 (Length: 251)
Name: NF10858_low_19
Description: NF10858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10858_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 246
Target Start/End: Complemental strand, 36370286 - 36370070
Alignment:
| Q |
30 |
tcattcaggctagagatacaatgactgagctagaaagatgcttactgaatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcct |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36370286 |
tcattcaggctagagatacaatgactgagctagaaagatgcttactgaatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcct |
36370187 |
T |
|
| Q |
130 |
ttcttctttttcaaaacaacaaccaagcaacctcactagatttctgtgttgaagtttgactaaaagtttaacttcatttttaaactcttcttttccttga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36370186 |
ttcttctttttcaaaacaacaaccaagcaacctcactagatttctgtgttgaagtttgactaaaagtttaacttcatttttaaactcttctttgccttga |
36370087 |
T |
|
| Q |
230 |
cctgaatctctggacaa |
246 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
36370086 |
cctgaatctctggacaa |
36370070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 36389241 - 36389043
Alignment:
| Q |
38 |
gctagagatacaatgactgagctagaaagatgcttactgaatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcctttcttctt |
137 |
Q |
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|
|||||||| ||||| | |||| | || |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36389241 |
gctagagagacaataagtgagtttgagagatgcttactgaatataaaaaggtctaggcttttgtttggtaagtattcataaactagcatcctttcttctt |
36389142 |
T |
|
| Q |
138 |
tttcaaaacaacaaccaagcaacctcactagatttctgtgttgaagtttgactaaaagtttaacttcatttttaaactcttcttttccttgacctgaat |
236 |
Q |
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||||||| ||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36389141 |
tttcaaagcaacaactgagcaaccttactagatttctgtgttggagtttaactaaaagtttaacttcagttttaaactcttcttttccttgacctgaat |
36389043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 77 - 246
Target Start/End: Complemental strand, 36428585 - 36428416
Alignment:
| Q |
77 |
aatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcctttcttctttttcaaaacaacaaccaagcaacctcactagatttctgt |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
36428585 |
aatataaagaagtctaggcttttgtttggtagatattcataaactagcatcctttcttctttttcaaagcaacaaccgagcaacctcactagatttctgt |
36428486 |
T |
|
| Q |
177 |
gttgaagtttgactaaaagtttaacttcatttttaaactcttcttttccttgacctgaatctctggacaa |
246 |
Q |
| |
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|||| ||||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
36428485 |
gttggagtttaactaaaagtttaatttcattcttaaactcttctttgccttgacctgaatctctggacaa |
36428416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 32 - 246
Target Start/End: Complemental strand, 36418650 - 36418436
Alignment:
| Q |
32 |
attcaggctagagatacaatgactgagctagaaagatgcttactgaatataaagaagtctaggcttttgtttggtaagtattcataaactagcatccttt |
131 |
Q |
| |
|
||||||| |||||| ||||||| ||| ||| ||| || ||| ||||||||||||||||||||||||||||| || |||||| |||||||||||||||| |
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| T |
36418650 |
attcaggttagagagacaatgattgattcagagagaggcataccgaatataaagaagtctaggcttttgtttgataggtattcgtaaactagcatccttt |
36418551 |
T |
|
| Q |
132 |
cttctttttcaaaacaacaaccaagcaacctcactagatttctgtgttgaagtttgactaaaagtttaacttcatttttaaactcttcttttccttgacc |
231 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||| |||||||| |
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|
| T |
36418550 |
cttctttttcaaagcaacaaccgagcaacctcactagatttctgtgttggagtttaactaaaagtttaatttcattcttaaactcttctttgccttgacc |
36418451 |
T |
|
| Q |
232 |
tgaatctctggacaa |
246 |
Q |
| |
|
|||||||||||||| |
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|
| T |
36418450 |
agaatctctggacaa |
36418436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 77 - 236
Target Start/End: Complemental strand, 36375479 - 36375320
Alignment:
| Q |
77 |
aatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcctttcttctttttcaaaacaacaaccaagcaacctcactagatttctgt |
176 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
36375479 |
aatataaagaaatctaggcttttgtttggtaagtattcataaaccagcatcctttcttccttttcaaagcaacaacctagcaacctcactagatttctgt |
36375380 |
T |
|
| Q |
177 |
gttgaagtttgactaaaagtttaacttcatttttaaactcttcttttccttgacctgaat |
236 |
Q |
| |
|
|||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
36375379 |
gttggagtttaactaaaagtttaacttcagttttaaactcttcttttccttgacctgaat |
36375320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 76 - 246
Target Start/End: Complemental strand, 36406521 - 36406351
Alignment:
| Q |
76 |
gaatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcctttcttctttttcaaaacaacaaccaagcaacctcactagatttctg |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
36406521 |
gaatataaagaagtctaggcttttgtttggtaggtattcataaactaacatcctttcttctttttcaaagcaacaaccgagcaacctcactagatttctg |
36406422 |
T |
|
| Q |
176 |
tgttgaagtttgactaaaagtttaacttcatttttaaactcttcttttccttgacctgaatctctggacaa |
246 |
Q |
| |
|
||||| ||||| ||||||||| ||| |||||||||||||||| |||| |||||||| |||||||||||||| |
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|
| T |
36406421 |
tgttggagtttaactaaaagtgtaatttcatttttaaactctactttgccttgaccagaatctctggacaa |
36406351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 76 - 246
Target Start/End: Complemental strand, 36435084 - 36434914
Alignment:
| Q |
76 |
gaatataaagaagtctaggcttttgtttggtaagtattcataaactagcatcctttcttctttttcaaaacaacaaccaagcaacctcactagatttctg |
175 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
36435084 |
gaatataaagaagtccaggcttttgtttggtaggtattcataaactaacatcctttcttctttttcaaagcaacaaccgagcaacctcactagatttctg |
36434985 |
T |
|
| Q |
176 |
tgttgaagtttgactaaaagtttaacttcatttttaaactcttcttttccttgacctgaatctctggacaa |
246 |
Q |
| |
|
||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
36434984 |
tgttggagtttaactaaaagcgtaacttcagttttaaactcttcttttccttgacctgaatttttggacaa |
36434914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 32 - 246
Target Start/End: Complemental strand, 36398792 - 36398580
Alignment:
| Q |
32 |
attcaggctagagatacaatgactgagctagaaagatgcttactgaatataaagaagtctaggcttttgtttggtaagtattcataaactagcatccttt |
131 |
Q |
| |
|
||||| |||||||| ||||||| |||| ||| ||| | ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
36398792 |
attcaagctagagagacaatgagtgagtcagagaga--cataccgaatataaagaagtctaggcttttgtttggtaggtattcataaactagcattcttt |
36398695 |
T |
|
| Q |
132 |
cttctttttcaaaacaacaaccaagcaacctcactagatttctgtgttgaagtttgactaaaagtttaacttcatttttaaactcttcttttccttgacc |
231 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||||||||||| || || || ||||||||| ||| |||||||||||||||| |||| |||||||| |
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|
| T |
36398694 |
cttctttttcgaagcaacaaccaagcaaccttactagatttctgtgctggagcttaactaaaagtgtaatttcatttttaaactctactttgccttgacc |
36398595 |
T |
|
| Q |
232 |
tgaatctctggacaa |
246 |
Q |
| |
|
||| ||| ||||||| |
|
|
| T |
36398594 |
tgattctttggacaa |
36398580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 47584021 - 47583965
Alignment:
| Q |
161 |
ctcactagatttctgtgttgaagtttgactaaaagtttaacttcatttttaaactct |
217 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| || || ||| ||||||||||||||| |
|
|
| T |
47584021 |
ctcactagatttctgtgttgaagcttggctataacttgaacctcatttttaaactct |
47583965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 47640335 - 47640295
Alignment:
| Q |
92 |
aggcttttgtttggtaagtattcataaactagcatcctttc |
132 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| |||| |
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|
| T |
47640335 |
aggcttttgtttggtatgtattcataaacaagcatcttttc |
47640295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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